Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_B18
         (978 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.012
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   4.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.012
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +1

Query: 730 PPPPQXPPXPXXGPXPXXXGXPPPXXPP--PPXXXP 831
           P P Q P  P  G  P     PPP  PP  PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 30.7 bits (66), Expect = 0.021
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 725 PAPHXPXGRPXPXXAPXPXXXXSPP-PEXPPPPXXPP 832
           P+   P  +P P  +P      SPP P   PPP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 27.9 bits (59), Expect = 0.15
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 727 GPPPPQXPPXPXXGPXPXXXGXPPPXXPPPPXXXPP 834
           G P PQ  P P   P     G PP     PP   PP
Sbjct: 19  GAPGPQ--PSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 26.6 bits (56), Expect = 0.34
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +1

Query: 799 PXXPPPPXXXPPXPNHXAXATXTTXPPTXPPPXXTPAXXP 918
           P   P P   P  P   +    +  PP   PP   P+  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.2 bits (55), Expect = 0.45
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +3

Query: 750 AXXPXGPPXXXXXXPPPXKXPPPXXXPPXPXPPGXXNXNNP 872
           A  P   P      P     P P   PP   PPG     NP
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
 Frame = +1

Query: 730 PPPPQX--PPXPXXGPXPXXXGXPPPXXPPPPXXXPP 834
           P  PQ   PP P  GP P      PP   P      P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
 Frame = +2

Query: 587 GKTPXKNXXXQGPPXX-PPTPQXGPXXGG 670
           G  P  +   Q P    PP P  GP  GG
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 14/58 (24%), Positives = 14/58 (24%)
 Frame = +1

Query: 799 PXXPPPPXXXPPXPNHXAXATXTTXPPTXPPPXXTPAXXPQHPPXXXXPXXPPXXPXP 972
           P    P     P P H          P    P   P   P HP     P   P    P
Sbjct: 98  PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,148
Number of Sequences: 438
Number of extensions: 10304
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)