Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_B08
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    97   4e-21
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   4.6  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 41/73 (56%), Positives = 56/73 (76%)
 Frame = +1

Query: 160 FIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPXLVKY 339
           FI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  LV +
Sbjct: 7   FIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGF 66

Query: 340 MSSGPVVPMVWEG 378
           M+SGPV  M+WEG
Sbjct: 67  MASGPVCAMIWEG 79



 Score = 90.6 bits (215), Expect = 3e-19
 Identities = 42/77 (54%), Positives = 52/77 (67%)
 Frame = +2

Query: 362 LWYGRALMXVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVESAKKDIGLWF 541
           +W G+    VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+ESA ++I LWF
Sbjct: 76  IWEGK--QAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWF 133

Query: 542 TDXEXVGWTPANENWVY 592
              E   +    E W+Y
Sbjct: 134 QPSEIQVYDRTIEPWIY 150


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 355 VVPMVWEGLNVCEDWPSNAW 414
           +V   W+  +VC  W S+AW
Sbjct: 73  IVAKKWKAQDVCNKWASSAW 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,369
Number of Sequences: 5004
Number of extensions: 42024
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)