Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_B08
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   108   6e-24
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    46   3e-05
AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical...    38   0.009

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  108 bits (259), Expect = 6e-24
 Identities = 49/82 (59%), Positives = 62/82 (75%)
 Frame = +1

Query: 142 NNVXVLFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFF 321
           +N    FI +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFF
Sbjct: 2   SNTERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFF 61

Query: 322 PXLVKYMSSGPVVPMVWEGLNV 387
           P L++YMSSGPVV MVW+GL+V
Sbjct: 62  PSLIEYMSSGPVVAMVWQGLDV 83



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 44/78 (56%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
 Frame = +2

Query: 362 LWYGRALMXVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVESAKKDIGLWF 541
           +W G  L  VK GR MLGATNP  S PGTIRGD CIQ GRNI HGSD+V+SA ++I  WF
Sbjct: 77  VWQG--LDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICHGSDAVDSANREIAHWF 134

Query: 542 TDXEXVGW-TPANENWVY 592
              E   + +P   +WVY
Sbjct: 135 KQEEINDYASPFINSWVY 152


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +1

Query: 310 RPFFPXLVKYMSSGPVVPMVWEGLNV 387
           +PFFP L+ YMSSGPVV M+WEG +V
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDV 58


>AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.15 protein.
          Length = 139

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +1

Query: 124 LSCVSRNNVXVLFIMVKPDGV-QRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 300
           ++ V   N     +++KP+ V  R L    +      G ++  ++ +  S  L +Q Y+ 
Sbjct: 1   MTTVGSQNALKFLVVLKPEIVAHRVLAQVALSELRSNGIEIEEMRQMKISGSLAKQLYAQ 60

Query: 301 LASRPFFPXLVKYMSSGPVVPM 366
              + F+  LV+++SSGPV+ M
Sbjct: 61  HQGKFFYDRLVRHISSGPVIAM 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,988
Number of Sequences: 27780
Number of extensions: 245830
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)