Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_B03
(1047 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 31 1.0
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.4
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 31 1.8
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 31 1.8
U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical pr... 31 1.8
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 31 1.8
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 31 1.8
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 31 1.8
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 31 1.8
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 3.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.2
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 5.5
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 29 5.5
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 7.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 7.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 7.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 7.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 7.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.6
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 28 9.6
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 31.5 bits (68), Expect = 1.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P +PP PPPP
Sbjct: 134 PPPTPAAPPPPPPP 147
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.1 bits (67), Expect = 1.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P + P PPP
Sbjct: 64 PPPPPPPPPMCPPPPP 79
Score = 29.9 bits (64), Expect = 3.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 65 PPPPPPPPMCPPPPPP 80
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical protein
Y48E1B.1 protein.
Length = 497
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 357 PPPPPPPPPPPPPP 370
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 355 PAPPPPPPPPPPPPPP 370
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 134 PPPPPSPPPPPPPP 147
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 136 PPPSPPPPPPPPPP 149
>U29380-1|AAA68740.1| 346|Caenorhabditis elegans Hypothetical protein
ZK546.7 protein.
Length = 346
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 150 PPPPPIPPPGPPPP 163
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical protein
R144.4a protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 2 PPPPPPPPPPPPPP 15
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 3 PPPPPPPPPPPPPP 16
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 4 PPPPPPPPPPPPPP 17
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 2 PPPPPPPPPPPPPPPP 17
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical protein
R144.4b protein.
Length = 362
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 2 PPPPPPPPPPPPPP 15
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 3 PPPPPPPPPPPPPP 16
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 4 PPPPPPPPPPPPPP 17
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 2 PPPPPPPPPPPPPPPP 17
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 185 PPPPPIPPPGPPPP 198
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 182 PKPPPPPPIPPPGPPP 197
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP P PP PPPP
Sbjct: 185 PPPPPIPPPGPPPP 198
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 182 PKPPPPPPIPPPGPPP 197
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.9 bits (64), Expect = 3.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 141 PATSLILPKTTTLMETATNLSTTVHITWTVPK-ADLTSSLPLSLVL 275
PAT+ L +T + + +L TT T T+PK A+ T +L L L L
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKPAEATPTLGLGLGL 552
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP L+P PPP
Sbjct: 1343 PPPPPPSDDLTPVPPP 1358
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP SPP PPPP
Sbjct: 290 PPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP SPP PPPP
Sbjct: 311 PPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 1002 PPPXPXSPPXPPPP 1043
PPP SPP PPPP
Sbjct: 296 PPPRAGSPPPPPPP 309
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P L PPP
Sbjct: 86 PPPPPPPPTLKAPPPP 101
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 138 PPATSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLP 260
PP T+ L TTT +T T +TT T T P+ T++ P
Sbjct: 355 PPTTTTTLQTTTTRPQT-TKTTTTPQTTTTRPQTTKTTTTP 394
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical protein
R102.6 protein.
Length = 324
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 252 PPPPPPCPMPIPCPPP 267
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 758 PPPPPPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 758 PPPPPPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P P PPP
Sbjct: 341 PPPPPPPPGGCPPPPP 356
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P PPPP P L PPP
Sbjct: 577 PPPPPPPPMLGGPPPP 592
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P P PP P ++P PPP
Sbjct: 274 PPPMPPTPGMTPRPPP 289
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 992 PXPPPPXPXLSPXPPP 1039
P P PP P ++P PPP
Sbjct: 284 PPPMPPTPGMTPRPPP 299
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 168 TTTLMETATNLSTTVHITWTVPKADLTSSLPLS 266
TTT M T T ST + T T P+ ++P S
Sbjct: 294 TTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFS 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,697,589
Number of Sequences: 27780
Number of extensions: 228052
Number of successful extensions: 3475
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2857
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2782955308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -