Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_B03
         (1047 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 1005 PPXPXSPPXPP 1037
            PP P  PP PP
Sbjct: 338  PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 211  CILRGPSPRPTLLQA 255
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 141 PATSLILPKTTTLMETATNLSTT 209
           PAT++    TTT   T T  +TT
Sbjct: 654 PATTITTITTTTTTTTTTTTTTT 676


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,452
Number of Sequences: 438
Number of extensions: 4026
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34824789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)