Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_A19
         (1131 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.24 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.40 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect(2) = 0.24
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1   PPPPPPPP 24
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect(2) = 0.24
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 4   PPPPPPPXXXP 36
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1    PPPPPPPP 24
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1    PPPPPPPP 24
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 4  PPPPPPPXXXPXPPXPPXPPXPA 72
          P P P P   P  P    PP P+
Sbjct: 21 PGPQPSPHQSPQAPQRGSPPNPS 43



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 13 PPPPXXXPXPPXPPXPP 63
          PP P   P P  PP  P
Sbjct: 39 PPNPSQGPPPGGPPGAP 55


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 62 GGXGGXGGXGXXXGGGGGG 6
          G  GG    G   GGGGGG
Sbjct: 33 GASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.152    0.558 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,805
Number of Sequences: 438
Number of extensions: 4821
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38198817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)