Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_A07
(964 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.060
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.10
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.18
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.42
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.060
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 638 PPANAXPPCRLSLLFPTPXPGXTRTXPPLPXXPPPXSXQXPRPASFPHYPPQP 796
P + PP L P+ P P P PP P PA P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +2
Query: 644 ANAXPPCRLSLLFPTPXPGXTRTXPPL-PXXPPPXSXQXPRPAS 772
A A PP S P P PPL P P P P PA+
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
Score = 26.6 bits (56), Expect = 5.2
Identities = 26/86 (30%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Frame = +2
Query: 638 PPANAXPPCRLSLLFPTPXPGXTRTXPPLPXXPPPXSXQXP-----RPASFPHYPP---- 790
PP P + P P G + PP P P Q P R S P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 791 ---QPRLRXLFNTXRXXXTSPSPLXP 859
P L L N R T P P P
Sbjct: 397 GRSAPALPPLGNASR-TSTPPVPTPP 421
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +2
Query: 641 PANAXPPCRLSLLFPTPXPGXTRTXPPLPXXPPPXSXQXPRPASFPHYPPQP 796
P +A P + P P PPLP P P P + P PP P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP---AAPPLPPAAPAPPPAP 480
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.10
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 656 PPCRLSLLFPTPXPGXTRTXPPLPXXPPPXSXQXPRPASFPHYPPQP 796
PP R P T PP+ PPP + P PA P PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA--PPMPAGPPSAPPPP 1734
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = +2
Query: 641 PANAXPPCRLSLLFPTPXPGXTRTXPP--LPXXP--PPXSXQXPRPASFPHYPPQP 796
P +A PP + PTP P PP P P PP + P PAS P P
Sbjct: 1694 PQSAAPP---QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.18
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 638 PPANAXPPCRLSLLFPTPXPGXTRTXPPLPXXPPP-XSXQXPRPASFPHYPPQP 796
P A A P + L PT P PP P PP S P P+S P P QP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP-PAQP 177
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +2
Query: 638 PPANAXPPCRLSLLFPTPXPGXTRTXPPLPXX-PPPXSXQXP--RPASFPHYP 787
PP +A P + P P PP+P PPP P P S P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.42
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 656 PPCRLSLLFPTPXPGXTRTXPPLP---XXPPPXSXQXPRPASFPHYPPQP 796
PP +++ PTP P PP P PPP A P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +2
Query: 638 PPANAXPPCRLSLLFPTPXPGXTRTXPPLPXXPPPXSXQXPRPASFPHYPP 790
PP P P P P PP P PP + P P P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 719 PLPXXPPPXSXQXPRPASFPHYPPQP 796
P P S P P SFP+ PP P
Sbjct: 160 PNPVQESNSSSSQPDPLSFPYLPPTP 185
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 638 PPANAXPPCRLSLLFPTPX-PGXTRTXPPLPXXPPPXSXQXP-RPASFPHYPPQPRL 802
PP PP L P P PG P PP P PA FP YP P +
Sbjct: 494 PPTTFAPPG--VPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAM 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,837
Number of Sequences: 5004
Number of extensions: 24407
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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