Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_A06
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.9  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   6.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   6.9  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 232 LACTATVFIIKKTSSPCI 285
           + C+A  F   KTS+PC+
Sbjct: 91  IGCSAEKFECSKTSNPCL 108


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 189 LVFGYINLFFSAFL---VGLHSYGVHYQKNVFSVYHGITTGVPTELSIALYCLEIILTSF 359
           ++F  I + F A L   +GL        +NV    HG T  V +  +I      +++T F
Sbjct: 211 ILFFLIPMVFIAVLYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKTITRMLSAVVITFF 270

Query: 360 LIY 368
           + +
Sbjct: 271 ICW 273


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 594 LYDNPLHQIVTGEAKIESNGIYNNHY 671
           L DN     V  EAK +  G Y  HY
Sbjct: 93  LIDNKPEIWVLLEAKYDPTGAYKQHY 118


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 594 LYDNPLHQIVTGEAKIESNGIYNNHY 671
           L DN     V  EAK +  G Y  HY
Sbjct: 93  LIDNKPEIWVLLEAKYDPTGAYKQHY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,999
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)