Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_A02
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 281 SVPCRPSRPDGGAFRRSRGTRREEHHLLRNRPCTYRSHC 165
           +V CR S P G A   S  T R E  L     C Y +HC
Sbjct: 711 NVMCRTSGPRGVAI-VSASTARSEQFL-----CRYEAHC 743



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 3/132 (2%)
 Frame = +3

Query: 375  TWRRFGIIPSTMSCVSPPRNTPXLLTEAPLNPKANREKMTQIMFETFNTPAMYV---AIQ 545
            TW    +  S +     PR  P   TE  L+    RE    +     N   +YV    I+
Sbjct: 772  TWNTNAVDCSGLGVEEIPRRIPMDATEVYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIE 831

Query: 546  AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMXILTXPR 725
            ++ +   +G     +L   D     +  +E   L H  LR      +L  ++  +   P 
Sbjct: 832  SIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSH--LRELYLQNNLIGFIGNLTFLPL 889

Query: 726  XLVHYHRRXGNR 761
              +   R  GNR
Sbjct: 890  RSLEILRLSGNR 901


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,212
Number of Sequences: 438
Number of extensions: 5927
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)