Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_P20
(1031 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 40 6e-04
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.023
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.038
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.038
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.066
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.11
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.15
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 32 0.15
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.81
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.7
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 7.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 10.0
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 39.9 bits (89), Expect = 6e-04
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Frame = +2
Query: 803 GXXXXXPIHXXPP-PGGGXPPXXXNPXXTPPXXXXPPPX-APPXPXXPPXXPPRXKXXXK 976
G P+ P P PP P PP PPP APP P PP PP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
Query: 977 TXXSPSP 997
P+P
Sbjct: 1740 APSVPNP 1746
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/62 (29%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Frame = +3
Query: 774 HXKXXPPXXPX---PXXXXLYTXXPPPGGGXPPXXXTPXXPXXXXXXPPPXPPHXXXXPP 944
H PP P P T PPP PP P PPP P P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Query: 945 XP 950
P
Sbjct: 1745 NP 1746
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect(2) = 0.023
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 839 PPGGGXPPXXXNPXXTPPXXXXPPPXAPPXP 931
PP PP P + P PPP PP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 24.2 bits (50), Expect(2) = 0.023
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 908 PPXAPPXPXXPPXXPPRXKXXXKTXXSPSPXPS 1006
P A P P PP PP T S P PS
Sbjct: 229 PKQADPLPAPPPPPPPTL-PPQSTNTSQLPMPS 260
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.038
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -3
Query: 954 GGXXGGXXGXGGAXGGGXXXXGGVXXGXCXXGGXPPPGGG 835
GG GG G GG GG GG G GG P GG
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 30.3 bits (65), Expect = 0.46
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -3
Query: 954 GGXXGGXXGXGGAXGGGXXXXGGVXXGXCXXGGXPPPGGG 835
GG GG G G GG GG G GG P GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -3
Query: 636 GXXXXGXXXXGGGGXGXEXXXGGXXXGPXXXGSFFXXXGGXXG 508
G G GGG G E GG GP G GG G
Sbjct: 217 GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
Score = 26.2 bits (55), Expect = 7.5
Identities = 27/84 (32%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Frame = -2
Query: 943 GGXXXXWGGXGGGXXXXXXGXXGVXXXGGXPPPGGGXXVYRXXXXG-XGXXGGXXXXXXX 767
GG +GG GG G G GG GG + G G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG--- 243
Query: 766 XXXXPRPGVXFWXGL-GXGGGXGG 698
PG F GL G GGG GG
Sbjct: 244 ------PG-GFGGGLGGFGGGPGG 260
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.038
Identities = 43/191 (22%), Positives = 49/191 (25%), Gaps = 10/191 (5%)
Frame = +2
Query: 455 GAPXAXGXXPLXXXKXXXPXXP-PXXXKKLPXXXGPXXXPPXXXSLPXPPPPXXXXPXXX 631
GAP A P+ P P P +P G P + P P P P
Sbjct: 1058 GAPSAP--PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Query: 632 XPXXXPXXXXXRXKNXFFNX-QXTPXXPPXXQXXPKTHXRAGXXXXXXXXXXXPXXPPGX 808
P P P P P +G P P
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
Query: 809 XXXXPIHXXPPPGGGXPPXXXNPXXTPPXXXX--------PPPXAPPXPXXPPXXPPRXK 964
P+ P P G PP P PP PP APP P PP
Sbjct: 1176 SGIPPV---PKPAAGVPPVPP-PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231
Query: 965 XXXKTXXSPSP 997
K P+P
Sbjct: 1232 PTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Frame = +3
Query: 801 PXPXXXXLYTXXPPPGGGXPPXXX---TPXXPXXXXXXPPPXPPHXXXXPPXPXPA 959
P P P P G PP P P PP PP PP P P+
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP--STAPPVPTPS 1223
Score = 25.8 bits (54), Expect = 10.0
Identities = 13/51 (25%), Positives = 16/51 (31%)
Frame = +3
Query: 459 PPPXAGXXPSXXXXXXPPXXPXPXKKNXXXXPGPXXTPXXXXXSXPPPPXP 611
P P +G P P P P + P P + PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.066
Identities = 39/170 (22%), Positives = 41/170 (24%), Gaps = 2/170 (1%)
Frame = +2
Query: 521 PXXXKKLPXXXGPXXXPPXXXSLPXPPPPXXXXPXXXXPXXXPXXXXXRXKNXFFNXQXT 700
P +P P P P P PP P P N N
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 701 PXXPPXXQXXPKTHXRAGXXXXXXXXXXXPXXPPGXXXXXPIHXXPPPGGGXPPXXXNPX 880
P PP P + A P PP PP G G P
Sbjct: 290 PPLPP-----PSSRVSAA-ALAANKKRPPPPPPPSRRN----RGKPPIGNGSSNSSLPPP 339
Query: 881 XTPPXXXXPP--PXAPPXPXXPPXXPPRXKXXXKTXXSPSPXPSXARXKN 1024
PP P P PP PPR T P P S N
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPR--SAPSTGRQPPPLSSSRAVSN 387
Score = 33.1 bits (72), Expect = 0.066
Identities = 43/191 (22%), Positives = 49/191 (25%), Gaps = 8/191 (4%)
Frame = +3
Query: 447 KKXXPPPXAGXXPSXXXXXXPPXXPXPXKKNXXXXPGPXXTPXXXXXSXPPPPXPXPXPX 626
KK PPP PS PP + P P + PP P P
Sbjct: 308 KKRPPPPPP---PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 627 XXRXXXTRXXXXXGXKTXSLTNKXXXXXXXXPXPHQKXTPGRGXXXXXXHXKXX-PPXXP 803
R + + + P P G PP P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 804 XPXXXXLYTXXPP--PGGGX--PPXXXT-PXXPXXXXXXP--PPXPPHXXXXPPXPXPAK 962
L PP P G PP + P P P PP PP PP P PA
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Query: 963 XXXXKXXXPLP 995
LP
Sbjct: 485 AAPVASIAELP 495
Score = 32.7 bits (71), Expect = 0.087
Identities = 40/166 (24%), Positives = 44/166 (26%), Gaps = 3/166 (1%)
Frame = +2
Query: 518 PPXXXKKLPXXXGPXXXPPXXXSLPXPPPPXXXXPXXXXPXXXPXXXXXRXKNXFFNXQX 697
PP G PP S P PPPP P P N
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP--PLSSSRAVSN------- 387
Query: 698 TPXXPPXXQXXPKTHXRAGXXXXXXXXXXXPXXPP-GXXXXXPIHXXPPPGGGXPPXXXN 874
P PP P R+ PP P P PP
Sbjct: 388 -PPAPP-----PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL-- 439
Query: 875 PXXTPPXXXXPP--PXAPPXPXXPPXXPPRXKXXXKTXXSPSPXPS 1006
P P PP P APP P P PP +P+P P+
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485
Score = 32.3 bits (70), Expect = 0.11
Identities = 25/104 (24%), Positives = 29/104 (27%), Gaps = 1/104 (0%)
Frame = +3
Query: 720 PXPHQKXTPGRGXXXXXXHXKXXPPXXPXPXXXXLYT-XXPPPGGGXPPXXXTPXXPXXX 896
P P + G+ PP P P + PP G PP P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 897 XXXPPPXPPHXXXXPPXPXPAKXXXXKXXXPLPXXPAARVXKTP 1028
PP PP P PA P P A+R P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALP-PLGNASRTSTPP 416
Score = 29.1 bits (62), Expect = 1.1
Identities = 43/180 (23%), Positives = 43/180 (23%), Gaps = 4/180 (2%)
Frame = +2
Query: 413 PPXGGGGXFFXXKXGAPX----AXGXXPLXXXKXXXPXXPPXXXKKLPXXXGPXXXPPXX 580
PP G G P A G PL P PP P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 581 XSLPXPPPPXXXXPXXXXPXXXPXXXXXRXKNXFFNXQXTPXXPPXXQXXPKTHXRAGXX 760
S P PPP P P P R TP P P
Sbjct: 385 VSNPPAPPPAI--PGRSAPALPPLGNASRTS--------TPPVPTPPSLPPSAPPSLPPS 434
Query: 761 XXXXXXXXXPXXPPGXXXXXPIHXXPPPGGGXPPXXXNPXXTPPXXXXPPPXAPPXPXXP 940
P PP PI PP G P PP PPP P P P
Sbjct: 435 APPSLPMGAPAAPP-LPPSAPI--APPLPAGMPAAPP----LPPAAPAPPPAPAPAPAAP 487
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +3
Query: 447 KKXXPPPXAGXXPSXXXXXXPPXXPXPXKKNXXXXPGPXXTPXXXXXSXPPPPXPXP 617
K PPP A P+ P P P P P P PPPP P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP---PGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.61
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Frame = +2
Query: 836 PPPGGGXPPXXXNPXXTPPXXXX----PPPXAPPX-----PXXPPXXPPRXKXXXKTXXS 988
PPP P P PP PPP PP P PP PP +
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYA 794
Query: 989 PSP 997
P+P
Sbjct: 795 PAP 797
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +2
Query: 836 PPPGGGXPPXXXNPXXTPPXXXXPPPXAPPXPXXPPXXPPRXKXXXKTXXSPSPXP 1003
PPP PP P P PPP P PP PP P P P
Sbjct: 732 PPP---PPPAVIVPTPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +3
Query: 801 PXPXXXXLYTXXPPPGGGXPPXXXTPXXPXXXXXXPPPXPP 923
P P + P P G PP P PPP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.15
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = +3
Query: 840 PPGGGXPPXXXTPXXPXXXXXXPPPXPPHXXXXPPXPXPAKXXXXKXXXPLPXXPAARVX 1019
PP PP + P P PP P P P+K P P PAA V
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAP-PIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 1020 KTP 1028
P
Sbjct: 183 SPP 185
Score = 31.5 bits (68), Expect = 0.20
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +2
Query: 827 HXXPPPGGGXPPXXXNPXXTPPXXXXPPPXAPPXPXXPPXXP-PRXKXXXKTXXSPSPXP 1003
H PP P TP PP APP P PP P K PS P
Sbjct: 114 HIGKSSASAAPPSAPAPP-TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Query: 1004 SXAR 1015
A+
Sbjct: 173 PPAQ 176
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +2
Query: 800 PGXXXXXPIHXXPPPGGGXP-PXXXNPXXTPPXXXXPPPXAPPXPXXPPXXPPR 958
P P P P P P P P PP AP P P PP+
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/70 (27%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Frame = +2
Query: 788 PXXPPGXXXXXPIHXXPPPGGGXPPXXXN-PXXTPPXXXXPPPXAPPXPXXPPXXPPRXK 964
P P P P P PP P +PP P PP P P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQA 209
Query: 965 XXXKTXXSPS 994
T PS
Sbjct: 210 PVANTSSRPS 219
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/74 (27%), Positives = 22/74 (29%)
Frame = +3
Query: 789 PPXXPXPXXXXLYTXXPPPGGGXPPXXXTPXXPXXXXXXPPPXPPHXXXXPPXPXPAKXX 968
PP P P + PP P P P P PP PP PA
Sbjct: 124 PPSAPAPPTPQ--SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA--A 179
Query: 969 XXKXXXPLPXXPAA 1010
K P P+A
Sbjct: 180 PVKSPPSAPSLPSA 193
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 828 TXXPPPGGGXPPXXXTPXXPXXXXXXPPPXPPHXXXXPPXPXP 956
T PPG PP P P PP PP P P P
Sbjct: 496 TTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538
Score = 30.3 bits (65), Expect = 0.46
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 800 PGXXXXXPIHXXPPPGGGXPPXXXNPXXTPPXXXXPPPXAPPXPXXPPXXP 952
PG P PPG PP P P PP PP PP P
Sbjct: 487 PGTSAPLPPTTFAPPGVPLPPIPGAP-GMPNLNMSQPPMVPPGMALPPGMP 536
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.81
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 957 RGGXXGGXXGXGGAXGGGXXXXGG 886
RGG GG G GGA GG GG
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGG 63
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -3
Query: 957 RGGXXGGXXGXGGAXGGGXXXXGGVXXGXCXXGGXPPPGGGXXCIGXXXXXPGGXXG 787
RGG GG G G GG GG G G GG G GG G
Sbjct: 11 RGGSRGGRGGFNGGRGGFGGGRGGARGGG-RGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 25.8 bits (54), Expect = 10.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 957 RGGXXGGXXGXGGAXGGGXXXXGG 886
RGG G G GG+ GG GG
Sbjct: 47 RGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 872 NPXXTPPXXXXPPPXAPPXPXXP 940
NP PP PP PP P P
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 842 PGGGXPPXXXNPXXTPPXXXXPPPXAPP 925
P G PP P PP PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQ--PPPPPPP 30
Score = 25.8 bits (54), Expect = 10.0
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +2
Query: 875 PXXTPPXXXXPPPXAPPXPXXPPXXP 952
P PP PP PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 10.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 905 PPPXAPPXPXXPPXXPP 955
PPP PP PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPP 25
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 872 NPXXTPPXXXXPPPXAPPXP 931
NP PP PPP APP P
Sbjct: 801 NPFKAPPPAPLPPP-APPLP 819
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 10.0
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 957 RGGXXGGXXGXGGAXGG-GXXXXGGVXXGXCXXGGXPPPGG 838
RGG G G GG+ GG G GG G G GG
Sbjct: 137 RGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,745
Number of Sequences: 5004
Number of extensions: 26892
Number of successful extensions: 301
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 539240220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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