Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_P18
(1233 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.35
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.61
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 4.3
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 30 4.3
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.5 bits (73), Expect = 0.35
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +1
Query: 841 PPPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXXGXGGXXPP 1020
PPPPP P G PP + PPPP PP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPP 603
Query: 1021 PPP 1029
PPP
Sbjct: 604 PPP 606
Score = 29.5 bits (63), Expect = 5.7
Identities = 19/68 (27%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Frame = +1
Query: 841 PPPPPXFFXXPGGXXXXX-----PXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXXGXG 1005
PPPP P G P PP G PPPP G
Sbjct: 669 PPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPS 728
Query: 1006 GXXPPPPP 1029
PP PP
Sbjct: 729 APAPPLPP 736
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.61
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 823 GGXXXXP-PPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXXG 999
GG P PPPP F GG PP G G P P G
Sbjct: 1155 GGLGGPPAPPPPAGFR--GGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPG 1212
Query: 1000 XGGXXPPPP 1026
G PPPP
Sbjct: 1213 VPGGPPPPP 1221
Score = 31.1 bits (67), Expect = 1.9
Identities = 26/77 (33%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Frame = +1
Query: 826 GXXXXPPPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXX------FGXXXXPPPPXXX 987
G PPPPP PGG P PP G G PPPP
Sbjct: 1105 GAGAPPPPPP-----PGGITGVPPP----PPIGGLGGHQAPPAPPLPEGIGGVPPPPPVG 1155
Query: 988 XXXGXGGXXPPPPPTXF 1038
G GG PPPP F
Sbjct: 1156 ---GLGGPPAPPPPAGF 1169
Score = 29.1 bits (62), Expect = 7.5
Identities = 28/109 (25%), Positives = 28/109 (25%), Gaps = 6/109 (5%)
Frame = +1
Query: 823 GGXXXXPPPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXX-- 996
GG PPPPP G P G PPPP
Sbjct: 1116 GGITGVPPPPP-IGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTP 1174
Query: 997 ---GXGGXXPPPPPTXFXXXXXXXXLPQ-XXKKFFXXGXGXXXXPPPGG 1131
GG PPPPP P G PPPGG
Sbjct: 1175 PPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.4
Identities = 21/63 (33%), Positives = 21/63 (33%)
Frame = +1
Query: 841 PPPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXXGXGGXXPP 1020
PPPPP P P PP G PPPP G G PP
Sbjct: 328 PPPPPKAAPPPPPPKGPPPP----PPAKGPPPPPPPKGPSPPPPPPPG----GKKGGPPP 379
Query: 1021 PPP 1029
PPP
Sbjct: 380 PPP 382
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 3.3
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = +1
Query: 844 PPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXXGXGGXXPPP 1023
PPPP G P PP G PPPP G GG PP
Sbjct: 333 PPPPAPSPSAAGAGSGPPP----PPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPA 388
Query: 1024 PP 1029
P
Sbjct: 389 LP 390
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 4.3
Identities = 16/62 (25%), Positives = 17/62 (27%)
Frame = +1
Query: 841 PPPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXXGXGGXXPP 1020
PPPPP + P PP PPPP PP
Sbjct: 82 PPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPP 141
Query: 1021 PP 1026
PP
Sbjct: 142 PP 143
>01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = +1
Query: 841 PPPPPXFFXXPGGXXXXXPXXXXXPPXXXXXGXXXXFGXXXXPPPPXXXXXXGXGGXXPP 1020
PPPPP G P G + PPPP PP
Sbjct: 112 PPPPPPHLLHYYGHPPPPPPPPPPFKGDHYGGVYQNWQQNGPPPPPDHVLKKVPSHPSPP 171
Query: 1021 PPP 1029
PPP
Sbjct: 172 PPP 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,840,477
Number of Sequences: 37544
Number of extensions: 406525
Number of successful extensions: 1422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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