Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_P17
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...   113   4e-26
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    75   1e-14
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    37   0.004

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score =  113 bits (271), Expect = 4e-26
 Identities = 56/92 (60%), Positives = 61/92 (66%)
 Frame = +2

Query: 404 LIFXVXXXXRXRIGXARXXLXRXLSEXXLRXAVLLIFANKXXLPNAMNAXEITXXLGLXS 583
           +IF V    R RI  A   L R L+E  LR A+LL+FANK  LPNAMNA EIT  LGL S
Sbjct: 88  IIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHS 147

Query: 584 LRXRNWYXQAXCXTSGDGLYXGLDWLSNQXKN 679
           LR R WY QA C TSGDGLY GL+WLS   KN
Sbjct: 148 LRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179



 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 42/86 (48%), Positives = 43/86 (50%)
 Frame = +1

Query: 145 GXLFAXXFXGLFGXXXXXXLXVGLXAAGXXXXLYXLXLGXXVXXXPXIGFNVXXVXXXXX 324
           G   +  F  LFG      L VGL AAG    LY L LG  V   P IGFNV  V     
Sbjct: 2   GLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61

Query: 325 SFXVWXVGGXXXIXPLWXXYFQNTXG 402
           SF VW VGG   I PLW  YFQNT G
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQG 87


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 39/91 (42%), Positives = 49/91 (53%)
 Frame = +2

Query: 404 LIFXVXXXXRXRIGXARXXLXRXLSEXXLRXAVLLIFANKXXLPNAMNAXEITXXLGLXS 583
           LIF V      RI  AR  L R +S+  +R  +LL+ ANK  LP A++  +IT  L L  
Sbjct: 92  LIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDK 151

Query: 584 LRXRNWYXQAXCXTSGDGLYXGLDWLSNQXK 676
           L+ R W  Q  C  +GDGL  GL WLS   K
Sbjct: 152 LKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 35/83 (42%), Positives = 38/83 (45%)
 Frame = +1

Query: 154 FAXXFXGLFGXXXXXXLXVGLXAAGXXXXLYXLXLGXXVXXXPXIGFNVXXVXXXXXSFX 333
           F+  F  LF       L +GL AAG    LY L L   V   P +GFNV  V      F 
Sbjct: 9   FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68

Query: 334 VWXVGGXXXIXPLWXXYFQNTXG 402
           VW VGG   I PLW  YF  T G
Sbjct: 69  VWDVGGQDKIRPLWRHYFTGTKG 91


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +1

Query: 202 LXVGLXAAGXXXXLYXLXLGXXVXXXPXIGFNVXXVXXXXXSFXVWXVGGXXXIXPLWXX 381
           L +GL  AG    L  L         P  GF +  +      F +W +GG   +   W  
Sbjct: 20  LLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKN 79

Query: 382 YFQNT 396
           YF++T
Sbjct: 80  YFEST 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,121
Number of Sequences: 5004
Number of extensions: 15484
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)