Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_P16
(920 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.5
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 31 1.5
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 31 1.5
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 31 1.5
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 3.5
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.2
AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid deplete... 29 6.2
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
G GGGG G GG GG GGG GG+ G
Sbjct: 87 GGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGG 130
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
G GGG G GG GG R GGG GG G
Sbjct: 83 GNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGG 126
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
G GGG G GG GG GGG GG G
Sbjct: 56 GRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGG 99
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGK 644
G GGGG G GG GG GGG GG+
Sbjct: 92 GGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGR 133
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 528 GGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
GGGG G GG GG+ GGG GG G
Sbjct: 83 GGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGG 123
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGG 641
G GGGG G GG GG GGG GG
Sbjct: 54 GGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGGGG 94
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 528 GGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
GGGG G GG GG+ GGG GG G
Sbjct: 108 GGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGG 148
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 528 GGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
GGGG G GG GG+ GGG GG G
Sbjct: 129 GGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGG 169
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXGXETXXXPRXXXPP 689
G GGG G GG GG GGG G G P PP
Sbjct: 248 GSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPP 304
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXGXETXXXPRXXXPP 689
G GGG G GG GG GGG G G P PP
Sbjct: 248 GSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPP 304
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 528 GGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
GGGG G GG GG GGG GG G
Sbjct: 75 GGGGGYGGGHGGAAVGGGYGGAVGGGGGGGYGGGHGGGHGG 115
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGKXG 650
G GGGG GG GG GGG GG G
Sbjct: 28 GRGGGGGGYSGGRGGGYGGGGGGGYGGGGYGGGGRGGGRGGSNG 71
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 677 PPGXXXGFXAXFPPXXXXXPPPPXSXXXDPPXLGXXP 567
PPG G PP PPPP PP +G P
Sbjct: 303 PPGRTPG-----PPGMPGMPPPPPPSRFGPPGMGGMP 334
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 677 PPGXXXGFXAXFPPXXXXXPPPPXSXXXDPPXLGXXP 567
PPG G PP PPPP PP +G P
Sbjct: 313 PPGRTPG-----PPGMPGMPPPPPPSRFGPPGMGGMP 344
>AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid depleted
protein 6 protein.
Length = 573
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +3
Query: 519 GEPGGGGXXGSXXGGXXXXXXXGGIXXXRXGGGRXXXXXGGK 644
G GGGG G GG GG R GG R GG+
Sbjct: 532 GGRGGGGFRGGDRGGFRGRGGGGGFRGGR-GGDRGGGFRGGR 572
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,432,725
Number of Sequences: 27780
Number of extensions: 91375
Number of successful extensions: 598
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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