Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_P15
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   146   5e-36
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   146   5e-36
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    28   2.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  146 bits (353), Expect = 5e-36
 Identities = 69/158 (43%), Positives = 92/158 (58%)
 Frame = +1

Query: 310 MVCVGVVGYIETPHGLRALLTVWAEXMSEXCRRRFYKNWYXXXXXXXXXXXXXWQXXLGR 489
           MV VGVVGY+ETP GLR+L TVWAE +SE  +RRFYKNW+             +      
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--ST 141

Query: 490 KSIEKXFKKMXRYCSVVRVXAHXHMXLLKXRXKXAHIMEXXLXGGTIEDKVKWAREHLEX 669
           +SI +  +++ +YCSVVRV AH  +       K AH+ME  + GG++ DKV+WAREH E 
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 670 PIPVDSVFAQDEXXDCXGVTKGXGYXXCPSRWXPXSXP 783
            + + S F Q+E  D  GVT+G G     +RW     P
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239



 Score =  120 bits (290), Expect = 2e-28
 Identities = 54/75 (72%), Positives = 62/75 (82%)
 Frame = +3

Query: 84  PRHGSXGFXPKKXSRRHRGXVKAFPKXXPSKPVHLTAFIGYKAGMTHVVRXPDRPGSKIN 263
           PRHGS GF P+K + R RG VKAFPK   SKPVHLTAF+GYKAGMTH+VR  DRPGSK++
Sbjct: 9   PRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMH 68

Query: 264 KKXXVEAVTIIETPP 308
           K+  +EAVTIIETPP
Sbjct: 69  KREILEAVTIIETPP 83


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  146 bits (353), Expect = 5e-36
 Identities = 69/158 (43%), Positives = 92/158 (58%)
 Frame = +1

Query: 310 MVCVGVVGYIETPHGLRALLTVWAEXMSEXCRRRFYKNWYXXXXXXXXXXXXXWQXXLGR 489
           MV VGVVGY+ETP GLR+L TVWAE +SE  +RRFYKNW+             +      
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--ST 141

Query: 490 KSIEKXFKKMXRYCSVVRVXAHXHMXLLKXRXKXAHIMEXXLXGGTIEDKVKWAREHLEX 669
           +SI +  +++ +YCSVVRV AH  +       K AH+ME  + GG++ DKV+WAREH E 
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 670 PIPVDSVFAQDEXXDCXGVTKGXGYXXCPSRWXPXSXP 783
            + + S F Q+E  D  GVT+G G     +RW     P
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239



 Score =  120 bits (289), Expect = 3e-28
 Identities = 53/75 (70%), Positives = 62/75 (82%)
 Frame = +3

Query: 84  PRHGSXGFXPKKXSRRHRGXVKAFPKXXPSKPVHLTAFIGYKAGMTHVVRXPDRPGSKIN 263
           PRHGS GF P+K + R RG VKAFPK   SKPVHLTAF+GYKAGMTH+VR  DRPGSK++
Sbjct: 9   PRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMH 68

Query: 264 KKXXVEAVTIIETPP 308
           K+  +EAVT+IETPP
Sbjct: 69  KREILEAVTVIETPP 83


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 251 FKNQQEXXRGGCHHHRDSSEWFVSVLLDTLRPLMDYAL 364
           FK++    + G HH  D  E F++  L TL  L D +L
Sbjct: 94  FKDEHLAQKKGLHHFADLKEIFLNKNLSTLDGLQDASL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,910
Number of Sequences: 5004
Number of extensions: 40328
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)