Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_P15
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   142   3e-34
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   140   1e-33
03_05_0574 - 25744078-25744572                                         29   4.8  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  142 bits (344), Expect = 3e-34
 Identities = 69/159 (43%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
 Frame = +1

Query: 310 MVCVGVVGYIETPHGLRALLTVWAEXMSEXCRRRFYKNWYXXXXXXXXXXXXXWQXXLGR 489
           +V VG+V Y++TP GLR+L +VWA+ +SE  RRRFYKNW              +    G+
Sbjct: 84  LVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGK 143

Query: 490 KSIEKXFKKMXRYCSVVRVXAHXHMXLLKX-RXKXAHIMEXXLXGGTIEDKVKWAREHLE 666
           K I+   +KM +Y S+VRV AH  +  +K  + K AH+ME  + GGTI DKV +  +  E
Sbjct: 144 KEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFE 203

Query: 667 XPIPVDSVFAQDEXXDCXGVTKGXGYXXCPSRWXPXSXP 783
             IPVD+VF +DE  D  GVTKG GY    +RW     P
Sbjct: 204 KEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242



 Score =  119 bits (286), Expect = 3e-27
 Identities = 52/75 (69%), Positives = 61/75 (81%)
 Frame = +3

Query: 84  PRHGSXGFXPKKXSRRHRGXVKAFPKXXPSKPVHLTAFIGYKAGMTHVVRXPDRPGSKIN 263
           PRHGS GF P+K S RHRG VK+FPK   SKP HLT+F+GYKAGMTH+VR  ++PGSK++
Sbjct: 9   PRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLH 68

Query: 264 KKXXVEAVTIIETPP 308
           KK   EAVTIIETPP
Sbjct: 69  KKETCEAVTIIETPP 83


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  140 bits (340), Expect = 1e-33
 Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
 Frame = +1

Query: 310 MVCVGVVGYIETPHGLRALLTVWAEXMSEXCRRRFYKNWYXXXXXXXXXXXXXWQXXLGR 489
           +V VG+V Y++TP GLR+L +VWA+ +SE  RRRFYKNW              +    G+
Sbjct: 84  IVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGK 143

Query: 490 KSIEKXFKKMXRYCSVVRVXAHXHMXLLKX-RXKXAHIMEXXLXGGTIEDKVKWAREHLE 666
           K I+   +KM +Y SVVRV  H  +  +K  + K AH+ME  + GGTI DKV +  +  E
Sbjct: 144 KEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFE 203

Query: 667 XPIPVDSVFAQDEXXDCXGVTKGXGYXXCPSRWXPXSXP 783
             IPVD+VF +DE  D  GVTKG GY    +RW     P
Sbjct: 204 KEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242



 Score =  118 bits (283), Expect = 8e-27
 Identities = 51/75 (68%), Positives = 61/75 (81%)
 Frame = +3

Query: 84  PRHGSXGFXPKKXSRRHRGXVKAFPKXXPSKPVHLTAFIGYKAGMTHVVRXPDRPGSKIN 263
           PRHGS GF P+K S RHRG VK+FPK   +KP HLT+F+GYKAGMTH+VR  ++PGSK++
Sbjct: 9   PRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGSKLH 68

Query: 264 KKXXVEAVTIIETPP 308
           KK   EAVTIIETPP
Sbjct: 69  KKETCEAVTIIETPP 83


>03_05_0574 - 25744078-25744572
          Length = 164

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 305 SEWFVSVLLDTLRPLMDYALC*LSGRSXCLKXVDVASTKTGTNA 436
           SEW   + L  LR L D  +  L+G +  ++ + VAS   G  A
Sbjct: 98  SEWLARLKLRGLRQLFDDGIASLAGATPVIRKLSVASISFGPKA 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,344
Number of Sequences: 37544
Number of extensions: 297392
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)