Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_P12
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 149 5e-37
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 149 5e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 88 2e-18
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 87 3e-18
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 87 3e-18
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 51 2e-07
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 149 bits (361), Expect = 5e-37
Identities = 75/122 (61%), Positives = 79/122 (64%)
Frame = +1
Query: 88 FVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXGRTLSDYNXXK 267
FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L GRTLSDYN K
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
Query: 268 XSXLHLVLXLXGGXXEPSLRILAMKXXCXXXXCRKCYARLHPRATXCRKXKCGXXNXLXP 447
S LHLVL L GG EPSL+ LA K C CRKCYARL PRAT CRK KCG N L P
Sbjct: 64 ESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
Query: 448 XK 453
K
Sbjct: 124 KK 125
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 149 bits (361), Expect = 5e-37
Identities = 75/122 (61%), Positives = 79/122 (64%)
Frame = +1
Query: 88 FVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXGRTLSDYNXXK 267
FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L GRTLSDYN K
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
Query: 268 XSXLHLVLXLXGGXXEPSLRILAMKXXCXXXXCRKCYARLHPRATXCRKXKCGXXNXLXP 447
S LHLVL L GG EPSL+ LA K C CRKCYARL PRAT CRK KCG N L P
Sbjct: 64 ESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
Query: 448 XK 453
K
Sbjct: 124 KK 125
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 87.8 bits (208), Expect = 2e-18
Identities = 47/83 (56%), Positives = 50/83 (60%)
Frame = +1
Query: 58 VFXXRXXXXXFVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXG 237
V R FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L G
Sbjct: 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 129
Query: 238 RTLSDYNXXKXSXLHLVLXLXGG 306
RTLSDYN K S LHLVL L GG
Sbjct: 130 RTLSDYNIQKESTLHLVLRLRGG 152
Score = 87.8 bits (208), Expect = 2e-18
Identities = 47/83 (56%), Positives = 50/83 (60%)
Frame = +1
Query: 58 VFXXRXXXXXFVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXG 237
V R FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L G
Sbjct: 146 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 205
Query: 238 RTLSDYNXXKXSXLHLVLXLXGG 306
RTLSDYN K S LHLVL L GG
Sbjct: 206 RTLSDYNIQKESTLHLVLRLRGG 228
Score = 87.8 bits (208), Expect = 2e-18
Identities = 47/83 (56%), Positives = 50/83 (60%)
Frame = +1
Query: 58 VFXXRXXXXXFVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXG 237
V R FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L G
Sbjct: 222 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 281
Query: 238 RTLSDYNXXKXSXLHLVLXLXGG 306
RTLSDYN K S LHLVL L GG
Sbjct: 282 RTLSDYNIQKESTLHLVLRLRGG 304
Score = 87.8 bits (208), Expect = 2e-18
Identities = 47/83 (56%), Positives = 50/83 (60%)
Frame = +1
Query: 58 VFXXRXXXXXFVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXG 237
V R FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L G
Sbjct: 298 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG 357
Query: 238 RTLSDYNXXKXSXLHLVLXLXGG 306
RTLSDYN K S LHLVL L GG
Sbjct: 358 RTLSDYNIQKESTLHLVLRLRGG 380
Score = 87.0 bits (206), Expect = 3e-18
Identities = 45/73 (61%), Positives = 48/73 (65%)
Frame = +1
Query: 88 FVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXGRTLSDYNXXK 267
FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L GRTLSDYN K
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
Query: 268 XSXLHLVLXLXGG 306
S LHLVL L GG
Sbjct: 64 ESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 87.0 bits (206), Expect = 3e-18
Identities = 45/73 (61%), Positives = 48/73 (65%)
Frame = +1
Query: 88 FVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXGRTLSDYNXXK 267
FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L GRTLSDYN K
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
Query: 268 XSXLHLVLXLXGG 306
S LHLVL L GG
Sbjct: 64 ESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 87.0 bits (206), Expect = 3e-18
Identities = 45/73 (61%), Positives = 48/73 (65%)
Frame = +1
Query: 88 FVXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXGRTLSDYNXXK 267
FV TLTG TLEV +SDT +NV +KI G PP RLIFAG L GRTLSDYN K
Sbjct: 4 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
Query: 268 XSXLHLVLXLXGG 306
S LHLVL L GG
Sbjct: 64 ESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/72 (34%), Positives = 35/72 (48%)
Frame = +1
Query: 91 VXTLTGXPXTLEVXASDTXENVXAKIXXXXGXPPXXXRLIFAGXXLXXGRTLSDYNXXKX 270
V TLTG L++ +D + ++ G PP RLI+AG + + Y+
Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGG 64
Query: 271 SXLHLVLXLXGG 306
S LHLVL L GG
Sbjct: 65 SVLHLVLALRGG 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,622
Number of Sequences: 5004
Number of extensions: 11454
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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