Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_P08
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.75 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 611 PPPPPPPPXXGXXXPP 564
           PPPPPPPP      PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776



 Score = 29.5 bits (63), Expect = 0.98
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 609 PPPPPPPPXXXXXPPP 562
           PPPPPPPP      PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776



 Score = 29.5 bits (63), Expect = 0.98
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 609 PPPPPPPPXXXXXPPP 562
           PPPPPPP      PPP
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 611 PPPPPPPPXXGXXXPP 564
           PPPPPPP   G   PP
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 642 PXXGVXXXXXXPPPPPPP 589
           P  GV      PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 611 PPPPPPPPXXGXXXPPQKKKKKXXXPPPKKXXXKTXPAG 495
           P PPP P   G   PP         PPP         AG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -2

Query: 611 PPPPPPPPXXGXXXPPQKKKKKXXXPPPKKXXXKTXPAG 495
           PPPPPPP       PP          PP     ++  AG
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = -2

Query: 611 PPPPPP--PPXXGXXXPPQKKKKKXXXP--PPKKXXXKTXPA 498
           PPPPPP   P  G   PP    +    P  PP     ++ PA
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 611 PPPPPPPPXXGXXXPPQKKKKKXXXPPP 528
           PPPPPPP        P   + +   PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = -2

Query: 641 PXGGWXXXXXPPPPPPPP---XXGXXXPPQKKKKKXXXPPPK 525
           P G        PPPPPPP     G    P + +     PPP+
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 611 PPPPPPPPXXGXXXPPQKKKKKXXXPPPKKXXXKT 507
           PPPPPP        P   + +    PPP +    T
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = -2

Query: 611 PPPPPPPPXXGXXXPPQKKKKKXXXPPPKKXXXKTXPAG 495
           PP PPP            KK+    PPP +      P G
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIG 328


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -1

Query: 603 PPPPPPXXXXXPPPK---KKKKXXFXPPQKXXXKNPPG 499
           PP PPP     PP K   ++++    PP     KNP G
Sbjct: 226 PPSPPPPVLHSPPRKVSAQEQQDWQIPPSISNWKNPKG 263


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = -1

Query: 609 PPPPPPPP--XXXXXPPP 562
           PPPPPPPP       PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 610 PPPPPPPP 587
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 641 PXGGWXXXXXPPPPPPP 591
           P  G+     PPPPPPP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 642 PXXGVXXXXXXPPPPPPPP 586
           P  G       PPPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 610 PPPPPPPP 587
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 609 PPPPPPPP 586
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 609 PPPPPPPPXXXXXPPPKK 556
           PPPPPPPP      P  +
Sbjct: 370 PPPPPPPPELLNHSPKSR 387



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 611 PPPPPPPP 588
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 606 PPPPPPPXXXXXPPPKKK 553
           PPPPPPP       PK +
Sbjct: 370 PPPPPPPPELLNHSPKSR 387


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 619 FXXPPPPPPPP 587
           +  PPPPPPPP
Sbjct: 187 YNPPPPPPPPP 197



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 609 PPPPPPPP 586
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 609 PPPPPPPP 586
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 611  PPPPPPPP 588
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 609  PPPPPPPP 586
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 610 PPPPPPPP 587
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 609 PPPPPPPP 586
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 610 PPPPPPPP 587
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 609 PPPPPPPP 586
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,267
Number of Sequences: 5004
Number of extensions: 39330
Number of successful extensions: 636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)