Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_P04
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       29   6.7  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   8.8  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 897 PXWGGGPXPXGXXLQGGXXKXPPXSXKGKXGKRXPVNXQGG 775
           P  GGG  P G    GG    PP +  G  G R P    GG
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPGAG-GGGGARPPAPGGGG 139


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/61 (32%), Positives = 22/61 (36%)
 Frame = +1

Query: 709 PPXXIXKXXGFPPXXPPLXPXFPTLXVYRXPFPXFPLXGXGGXFXXPPLEVXPXGVRSXP 888
           PP  +      PP  PP  P  P+L     P P  P  G G  F  PP    P    S  
Sbjct: 623 PPPPLPNHSVLPPPPPPPPP--PSLPNRLVPPP--PAPGIGNKFPAPPPPPPPPRSSSRT 678

Query: 889 P 891
           P
Sbjct: 679 P 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,721
Number of Sequences: 37544
Number of extensions: 240411
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)