Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_P03
         (1067 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    32   0.61 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.1  

>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 31/127 (24%), Positives = 35/127 (27%)
 Frame = -2

Query: 826 GGGXKVGXXGKVGXRXTGXGGGXXXXXXXXXXXXXXGVEXXGGRXXXXVGGRXGXXXGXX 647
           GGG   G  G  G R  G GGG              G    GG+      G  G   G  
Sbjct: 53  GGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQG-- 110

Query: 646 GAXXXRXTXWVXRXXGXGGQXXHGLXXHXGDXTNELXWXYGGXGNWPVXGVXXSXGRSXW 467
           G+       W        G    G     G  +N   W     G     G   S G+  W
Sbjct: 111 GSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGW 170

Query: 466 XPXSDMG 446
               D G
Sbjct: 171 GGSQDGG 177


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = +3

Query: 645 PXLPXXXPSLPPTXXXXRPPXXSTXXXXXXXXXXXXXXXPPPXPVXRXPTFPXXPTFXPP 824
           P +P   PS+ P      PP                   PPP P  R P  P  P   PP
Sbjct: 261 PPVPPPPPSVTPMPPPM-PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319

Query: 825 P 827
           P
Sbjct: 320 P 320


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = +3

Query: 645 PXLPXXXPSLPPTXXXXRPPXXSTXXXXXXXXXXXXXXXPPPXPVXRXPTFPXXPTFXPP 824
           P +P   PS+ P      PP                   PPP P  R P  P  P   PP
Sbjct: 271 PPVPPPPPSVTPMPPPM-PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329

Query: 825 P 827
           P
Sbjct: 330 P 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,664,200
Number of Sequences: 27780
Number of extensions: 119827
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2856190974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)