Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_P02
         (943 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 920  PPPPPPXXXKGGA 882
            PPPPPP    G A
Sbjct: 1355 PPPPPPPPSSGQA 1367


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 767 GAPPPXXXXXXPGGXPPXDPP 829
           G+PP       PGG PP  PP
Sbjct: 37  GSPPNPSQGPPPGG-PPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 610 VXGKXXSPPXXXXKPPPPPXXPAP 539
           V G   +PP     PPPPP    P
Sbjct: 331 VLGDSDTPPKPAP-PPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 267 GXPXPPPKGXXPPPP 223
           G    PPK   PPPP
Sbjct: 333 GDSDTPPKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,470
Number of Sequences: 438
Number of extensions: 10395
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)