Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_O23
         (1030 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.037
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    26   7.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
 Frame = +1

Query: 487 SAAVLXXPTRPAXXTPETXXXXLACTXPLXVPPPXXXCLXLAXPMAAXPNLFHQLPPRTX 666
           S+A    P+ PA  TP++         P    PP         P  A P +   LPP   
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP-IPSSLPPPAQ 176

Query: 667 XPPXXRPXPCAPKXPSRXXPL-FKSPP 744
                +  P AP  PS   P+  K PP
Sbjct: 177 PAAPVKSPPSAPSLPSAVPPMPPKVPP 203


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/83 (25%), Positives = 26/83 (31%)
 Frame = +1

Query: 508 PTRPAXXTPETXXXXLACTXPLXVPPPXXXCLXLAXPMAAXPNLFHQLPPRTXXPPXXRP 687
           P R A   P         T P+  PP        + P +A P+L    P     PP    
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455

Query: 688 XPCAPKXPSRXXPLFKSPPXEDP 756
            P  P       PL  + P   P
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPPP 478


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 659 APXXPPYXAPXRAPQSXPHAXXPSSNPP 742
           AP  P Y  P R   S   +  PSS+PP
Sbjct: 18  APTLPLYNVPVRRSISSSSSIPPSSSPP 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,978
Number of Sequences: 5004
Number of extensions: 15438
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)