Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_O21
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   4.7  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    26   6.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   8.3  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    26   8.3  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 367 VADPELVAVLHGVPSLVNDQVVDYILDDG 281
           V D   V + H +PS+V D   DYI  +G
Sbjct: 239 VYDSPWVDLTHSLPSVVADDAADYIPSEG 267


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +2

Query: 281 SIIQNVVDDLIIDKRRNTMEYCYKLWVGNGQHIVRKYF 394
           +II   V + I+D+  +  ++C ++W G     +R ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 481 QPIPRTKDLHSAMVQTSRLNSSVGSSLPCGRTTE 582
           Q   + KD+ SA  +   +NSS  SS  C   T+
Sbjct: 108 QQTEKEKDVDSASAENESINSSSSSSKECSTQTQ 141


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 394 EVLSNNVLSVADPELVAVLHGVPSLVNDQVVDYILD 287
           E LS    S   P+L    HGV + VN  V DYI D
Sbjct: 198 ETLSQPAFSFNVPDL----HGVDNKVNQYVFDYIKD 229


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 595 PLKYTLLFSHKVMNFQLTSSVCLSAPSPNASLSFEGLVVEPS 470
           PL+  ++F+ K +   L      +  SPN S+S  G+ +E S
Sbjct: 74  PLEEEIVFTEKQLLVDLDVCSISNVQSPNCSVSEFGIAIEES 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,586
Number of Sequences: 5004
Number of extensions: 43703
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)