Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_O21
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.70 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   1.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 24/106 (22%), Positives = 43/106 (40%)
 Frame = -1

Query: 601 CGPLKYTLLFSHKVMNFQLTSSVCLSAPSPNASLSFEGLVVEPSFRARL*FLEMSLTKFP 422
           CG  KYT  F+H+ +N +  S++ L      +   F     E   +A    + + +T  P
Sbjct: 238 CGLQKYTRSFAHQSINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKA----MFLVVTAQP 293

Query: 421 AMMSSKVKGEVLSNNVLSVADPELVAVLHGVPSLVNDQVVDYILDD 284
              + K   E + ++V +        + H  P +V  Q   Y+  D
Sbjct: 294 VHSAYKAPEETIISSVFTTRHNATCYLSHVDPDVV--QYFGYLPQD 337


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 595 VHNTKYNQYLKMSSKTDCXNRDRLVY 672
           V N K   YL++ ++  C N +R  Y
Sbjct: 478 VENFKGGMYLRLKARRACMNYERFTY 503


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 595 VHNTKYNQYLKMSSKTDCXNRDRLVY 672
           V N K   YL++ ++  C N +R  Y
Sbjct: 478 VENFKGGMYLRLKARRACMNYERFTY 503


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 601 CGPLKYTLLFSHKVMNFQLTSSVCL 527
           CG  KYT  F+H+ +N +  S++ L
Sbjct: 233 CGLQKYTRSFAHQSINKEARSNLYL 257


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 536 SLLVCTIAECKSFVRGI 486
           +L+VCT+  C S + GI
Sbjct: 315 ALIVCTVNSCTSMLSGI 331


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 536 SLLVCTIAECKSFVRGI 486
           +L+VCT+  C S + GI
Sbjct: 368 ALIVCTVNSCTSMLSGI 384


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 481 QPIPRTKDLHSAMVQTSRLNSSVGSSLPCGRTTECTSRVHNT 606
           +P+  T  +HS  V T  +   +      G T   TSR   T
Sbjct: 506 EPVKITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRTETT 547


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 481 QPIPRTKDLHSAMVQTSRLNSSVGSSLPCGRTTECTSRVHNT 606
           +P+  T  +HS  V T  +   +      G T   TSR   T
Sbjct: 506 EPVKITIGIHSGEVVTGVIGHRMPRYCLFGNTVNLTSRTETT 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,775
Number of Sequences: 438
Number of extensions: 3456
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)