Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_O15
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   2.8  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   8.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   8.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.6  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 652 GHVGTRPGTRNFVELVTXTSVFAENIFTVNAST 554
           G  G  PGT +        ++F   IFT  AST
Sbjct: 65  GFFGVAPGTSSATNPNAMKTIFKNTIFTNVAST 97


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 764 FQNXRSFDRQGSSRKGPLGTRL 699
           FQN R+  ++ S +K PL  +L
Sbjct: 68  FQNKRAKIKKASGQKNPLALQL 89


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 764 FQNXRSFDRQGSSRKGPLGTRL 699
           FQN R+  ++ S +K PL  +L
Sbjct: 68  FQNKRAKIKKASGQKNPLALQL 89


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 235  LEGSVLASPLDXALKXGMLSL 297
            L+G  L  PLD  L  G LS+
Sbjct: 968  LDGKPLGFPLDRPLSLGALSV 988


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 307 CSLLEITCRXSTXRPEEMPKR 245
           CS+  IT   ST  P+  P+R
Sbjct: 403 CSIESITSVNSTSSPKPFPRR 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,435
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)