Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_O13
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    41   3e-04
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.5  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   7.8  

>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
 Frame = +3

Query: 219 FPAGKVPAFESADGKVLLTESNAIAYXVAN------ESLRGGDLATQARVWQWASWSDSE 380
           FP  K+P F  ADG  L      + Y          E L   +   +A + +W  + + +
Sbjct: 47  FPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFD 106

Query: 381 LL-PASCA-WVFPYLGIMQFNKQNVERAKSXLLXXLKVLDGXLLTRXFLVTERITXXDVI 554
           ++ P +   WV  + G + + ++  + + +  +  LK+ +  +  R +LV +R T  D+ 
Sbjct: 107 IVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLF 166

Query: 555 VFSTLLXAFQXVLEPSVRSSLIXVQXWXLXVXXQXKV 665
             S L   F  +++   R  L  +  + + +  Q K+
Sbjct: 167 FGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 328 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 423
           +W+P PV  SG    T+  C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 376 VNYCLLPVLGSSLTLVSCNSTNRML 450
           V + L+P LG  L + SCN+  R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,078
Number of Sequences: 5004
Number of extensions: 32909
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)