Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_O13
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 70 2e-12
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 66 3e-11
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 36 0.054
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 33 0.22
11_06_0584 - 25220371-25222917 29 6.2
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 6.2
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 28 8.2
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 70.1 bits (164), Expect = 2e-12
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 4/180 (2%)
Frame = +3
Query: 195 KSXAFLXXFPAGKVPAFESADGKVLLTESNAIAYXVA----NESLRGGDLATQARVWQWA 362
K+ FL P GK+P E+ +G V ESNAIA VA N SL G L + + QW
Sbjct: 65 KTPEFLKMNPLGKIPVLETPEGAVF--ESNAIARYVARLKDNSSLCGSSLIDYSHIEQWM 122
Query: 363 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSXLLXXLKVLDGXLLTRXFLVTERITX 542
+S +E+ W++P LG + E A + L L L+ L + +LV +T
Sbjct: 123 DFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTL 182
Query: 543 XDVIVFSTLLXAFQXVLEPSVRSSLIXVQXWXLXVXXQXKVXXVVGSXXLCXGPPKXXPK 722
D+++ L F +L S S V+ + + Q V+G P K
Sbjct: 183 ADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQKK 242
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 66.1 bits (154), Expect = 3e-11
Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 13/189 (6%)
Frame = +3
Query: 195 KSXAFLXXFPAGKVPAFESADGKVLLTESNAIAYXV-------------ANESLRGGDLA 335
K+ FL P GK+P E+ DG V ESNAIA V A+ L G L
Sbjct: 41 KTPEFLKMNPIGKIPVLETPDGPVF--ESNAIARYVLSHCHFPEVTRSKADNPLYGSSLI 98
Query: 336 TQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSXLLXXLKVLDGXLLTRX 515
A + QW +S +E+ W++P LGI + + E A + L L L+ L +
Sbjct: 99 EYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNT 158
Query: 516 FLVTERITXXDVIVFSTLLXAFQXVLEPSVRSSLIXVQXWXLXVXXQXKVXXVVGSXXLC 695
+LV +T D+++ L F ++ S S V+ + + Q V+G
Sbjct: 159 YLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQA 218
Query: 696 XGPPKXXPK 722
P K
Sbjct: 219 ESVPPVQKK 227
Score = 65.7 bits (153), Expect = 4e-11
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Frame = +3
Query: 195 KSXAFLXXFPAGKVPAFESADGKVLLTESNAIAYXVANES-------------LRGGDLA 335
K+ +L P GKVP E+ DG V ESNAIA V + S L G L
Sbjct: 602 KTPEYLKMNPIGKVPILETPDGPVF--ESNAIARYVLSSSHFPEVTRSKSDNPLYGSSLI 659
Query: 336 TQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSXLLXXLKVLDGXLLTRX 515
A + QW +S +E+ + W+FP LG + + E A + L L L+ L +
Sbjct: 660 EYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNT 719
Query: 516 FLVTERITXXDVIVFSTLLXAFQXVLEPSVRSSLIXVQXWXLXVXXQXKVXXVVGSXXLC 695
+LV +T D+++ L F ++ + S V+ + + Q V+G
Sbjct: 720 YLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQA 779
Query: 696 XGPPKXXPK 722
P+ K
Sbjct: 780 DSVPQVQKK 788
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 35.5 bits (78), Expect = 0.054
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 195 KSXAFLXXFPAGKVPAFESADGKVLLTESNAI-AYXVAN----ESLRGGDLATQARVWQW 359
+S L P GK+PAFE DG+V L ES AI Y + N + LR G+L A V W
Sbjct: 41 RSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYVLRNYNKPDLLREGNLEESAMVDMW 98
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 33.5 bits (73), Expect = 0.22
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 9/160 (5%)
Frame = +3
Query: 222 PAGKVPAFESADGKVLLTESNAIAYXV----ANESLRGGDLATQARVWQWASWSDSELLP 389
P G+VPAFE DG + L ES AI+ + ++ LR +L+ A V W S
Sbjct: 51 PFGQVPAFE--DGDLTLFESRAISKYILRKHGSDLLRESNLSESAMVDVWLEVESSHFDG 108
Query: 390 ASCAWVFPYLGIMQF-----NKQNVERAKSXLLXXLKVLDGXLLTRXFLVTERITXXDVI 554
A +F + F + V + L L+V + L +L + I+ D+
Sbjct: 109 AMSPIIFQCFIVPMFMGGATDIGVVNESLEKLKKALEVYEAQLSKSKYLAGDFISLADIS 168
Query: 555 VFSTLLXAFQXVLEPSVRSSLIXVQXWXLXVXXQXKVXXV 674
F T+ SV + V+ W V + V V
Sbjct: 169 HFPTVYYLLASA-HASVLEAYPRVKAWIDDVMQRPSVKKV 207
>11_06_0584 - 25220371-25222917
Length = 848
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 460 FARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 368
+ +ST C C +PR K +AG S+++D
Sbjct: 408 WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/56 (26%), Positives = 20/56 (35%)
Frame = -3
Query: 170 RXDXHSRTRKXVRRATXEKRGRXPEKXKDPXRQGGXXGKPTSEVXKKARVGRQXXD 3
R S R R+A E+R R P K P ++ P K G+ D
Sbjct: 553 RPTGSSSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKPSQGKNHRD 608
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 489 LDGXLLTRXFLVTERITXXDVIVFSTL 569
LDG L +R FLV+ ++ D++V+S L
Sbjct: 102 LDGYLASRTFLVSYGLSIADIVVWSNL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,454
Number of Sequences: 37544
Number of extensions: 259629
Number of successful extensions: 569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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