Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_O09
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.41 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 814 PPPXNPPXXPPXXXPAXQXXKP 879
           PPP  PP  PP   P+     P
Sbjct: 46  PPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 768 RGGXPPPSX*KXXGXPPPKXPPPXPP 845
           RG  P PS       PPP  PP  PP
Sbjct: 36  RGSPPNPSQ-----GPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +2

Query: 581 PXPPPXXGXXGFPPXPGGXPPXXXXXXXPP 670
           P   P     G PP P   PP       PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 813 PPPKXPPPXPP 845
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 587 PPPXXGXXGFPPXPGGXP 640
           P P  G  G  P P G P
Sbjct: 115 PSPGMGHMGHTPTPNGHP 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.155    0.542 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,491
Number of Sequences: 438
Number of extensions: 6815
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)