Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_O08
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1172 - 28147957-28148274,28149362-28149877                       32   0.70 
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.8  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   5.0  
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474...    29   5.0  

>06_03_1172 - 28147957-28148274,28149362-28149877
          Length = 277

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 686 PPPPGXXGVFXFLAP--FXPXPPPXKXXXP 769
           PPPP    V+ FL P  F P PPP     P
Sbjct: 13  PPPPSPPSVYPFLPPATFIPPPPPAATAEP 42


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +2

Query: 587 PPXXXXXPXGXXXXXXXGGPPKKXXXXPX---F*XTPPPPGXXGVFXFLAPFXPXPPP 751
           PP     P          GPP++    P    +   PPPP   GV     P  P PPP
Sbjct: 57  PPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPP 114


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 685 PPPPXGKXGFFXFGPLXPXPPP 750
           PPPP GK G    GP  P PPP
Sbjct: 931 PPPPPGKPG----GPPPPPPPP 948


>09_04_0424 +
           17444261-17444665,17445974-17446367,17447367-17447425,
           17447507-17447637,17447737-17447833,17447936-17448100
          Length = 416

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/61 (26%), Positives = 17/61 (27%)
 Frame = +1

Query: 586 PPPXXXXPPXGXXXXXXXGXPKKXVXXTXFLXXPPPPXGKXGFFXFGPLXPXPPPXKXXX 765
           PPP    PP           P            P PP     F  F  + P PPP     
Sbjct: 25  PPPQAALPPPPHWVAMPFAPPGAAAMVMQHQMAPAPPQFAPHFVPFHAVGPPPPPQPRAA 84

Query: 766 P 768
           P
Sbjct: 85  P 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,398
Number of Sequences: 37544
Number of extensions: 323447
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)