Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_O08
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.4
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 4.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 4.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 4.5
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 5.9
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 28 7.8
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Frame = +2
Query: 572 GGXXXPPXXXXXPXGXXXXXXXGGPPKKXXXX--PXF*XTPPPPGXXGVFXFLAPFXPXP 745
G PP P GGPP P PPPP G ++ P P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 746 PPXKXXXP 769
PP P
Sbjct: 762 PPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Frame = +2
Query: 572 GGXXXPPXXXXXPXGXXXXXXXGGPPKKXXXX--PXF*XTPPPPGXXGVFXFLAPFXPXP 745
G PP P GGPP P PPPP G ++ P P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 746 PPXKXXXP 769
PP P
Sbjct: 762 PPPPGGCP 769
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 687 PPPXGXXGFFXFWPPSPXXPP 749
PP G F FWPP P PP
Sbjct: 427 PPHHGHHHFPPFWPPCPPPPP 447
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Frame = +2
Query: 572 GGXXXPPXXXXXPXGXXXXXXXGGPPKKXXXX--PXF*XTPPPPGXXGVFXFLAPFXPXP 745
G PP P GGPP P PPPP G ++ P P
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 746 PPXKXXXP 769
PP P
Sbjct: 345 PPPPGGCP 352
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = -1
Query: 844 WGEKXXXXPXXXEGXTPGXPXXXXXGXXXFXWGGXXGEGGQKXKNPXXPXGGGGXLKXGX 665
WG G G G WG G G P GGGG + G
Sbjct: 229 WGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 288
Query: 664 XXXFFWGXPXXXXXPXPXGXXXXXGGXG 581
WG P G GG G
Sbjct: 289 GGQGGWGGPQQQQQGGWGGPQQGGGGGG 316
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = -1
Query: 844 WGEKXXXXPXXXEGXTPGXPXXXXXGXXXFXWGGXXGEGGQKXKNPXXPXGGGGXLKXGX 665
WG G G G WG G G P GGGG + G
Sbjct: 191 WGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 250
Query: 664 XXXFFWGXPXXXXXPXPXGXXXXXGGXG 581
WG P G GG G
Sbjct: 251 GGQGGWGGPQQQQQGGWGGPQQGGGGGG 278
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = -1
Query: 844 WGEKXXXXPXXXEGXTPGXPXXXXXGXXXFXWGGXXGEGGQKXKNPXXPXGGGGXLKXGX 665
WG G G G WG G G P GGGG + G
Sbjct: 229 WGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 288
Query: 664 XXXFFWGXPXXXXXPXPXGXXXXXGGXG 581
WG P G GG G
Sbjct: 289 GGQGGWGGPQQQQQGGWGGPQQGGGGGG 316
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/80 (26%), Positives = 22/80 (27%)
Frame = -1
Query: 820 PXXXEGXTPGXPXXXXXGXXXFXWGGXXGEGGQKXKNPXXPXGGGGXLKXGXXXXFFWGX 641
P G G G WG G G P GGGG + G WG
Sbjct: 200 PGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGG 259
Query: 640 PXXXXXPXPXGXXXXXGGXG 581
P G GG G
Sbjct: 260 PQQQQQGGWGGPQQGGGGGG 279
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/80 (26%), Positives = 22/80 (27%)
Frame = -1
Query: 820 PXXXEGXTPGXPXXXXXGXXXFXWGGXXGEGGQKXKNPXXPXGGGGXLKXGXXXXFFWGX 641
P G G G WG G G P GGGG + G WG
Sbjct: 238 PGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGG 297
Query: 640 PXXXXXPXPXGXXXXXGGXG 581
P G GG G
Sbjct: 298 PQQQQQGGWGGPQQGGGGGG 317
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 644 PPKKXXXXPXF*XTPPPPGXXGVFXFLAPFXPXPPPXK 757
PP+ P PPPG G +P+ PPP K
Sbjct: 2286 PPQMYPMQPGQQRFLPPPGHFGPMGVPSPYGSVPPPTK 2323
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 644 PPKKXXXXPXF*XTPPPPGXXGVFXFLAPFXPXPPPXK 757
PP+ P PPPG G +P+ PPP K
Sbjct: 2704 PPQMYPMQPGQQRFLPPPGHFGPMGVPSPYGSVPPPTK 2741
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,734
Number of Sequences: 27780
Number of extensions: 211300
Number of successful extensions: 432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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