Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N23
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    27   2.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.6  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   4.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   6.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.0  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 461 AFAIRNSPSAIPNAPN-FNTL-GGGSGLHVQTEGG-RIVERGAL 583
           AF++ +   A  N  N F  + GGG G HV  +GG +I ERG +
Sbjct: 13  AFSLTHKTFAFCNCNNRFKMMSGGGKGKHVGGKGGSKIGERGQM 56


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 580 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTPASRSL 684
           T ++STG  T  + + T S   P+  TSTP + S+
Sbjct: 754 TTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSI 788


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 447 SWLLLWNKLTLPATPSCSPKPGM--RVPVRLSPCPFTLSRARPCGGSAE 307
           SW + +    + AT S +         PV+   C F LS+ RP GG +E
Sbjct: 575 SWAICFTYAAMFATGSLASAGRYYENCPVQKKACEFLLSKQRPDGGWSE 623


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 580 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTPAS 675
           T++SST +T+ P  +  C+    V  TSTP +
Sbjct: 515 TISSSTPVTSTPVTTTNCTTSTSVLYTSTPVT 546



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 580 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTP 669
           T++SST +T+ P  +  C+    V  TSTP
Sbjct: 574 TISSSTPVTSTPVTTTNCTTSTSVLYTSTP 603


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 226  ALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGPRSGQRKRARAEPDRDPH 381
            AL++ +  + K  L    SA F     L  A +GP +    RA    DR+PH
Sbjct: 1091 ALRLAINASHK--LKNYKSASFLGNKLLQLAESGPAAEAANRAITLGDRNPH 1140


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 580 TLTSSTGMTTRPAVS*TCSDLRPVRSTSTPASRSLI 687
           T++SS+ +   P+V+ + S    + + STPA+ ++I
Sbjct: 310 TISSSSFIVESPSVALSTSSTTTITNASTPAANTII 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,724
Number of Sequences: 5004
Number of extensions: 56237
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)