Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N22
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0459 + 3272479-3272817,3272927-3272992,3273104-3273169,327...    31   0.93 
12_01_0376 - 2934115-2934603                                           28   8.7  

>06_01_0459 +
           3272479-3272817,3272927-3272992,3273104-3273169,
           3274220-3274537,3274595-3274701,3274816-3274867
          Length = 315

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 616 DXRRFPPGNXPRALSLXPXLPXTGYPXPPFSL 711
           D    PP N P++L L P +P T  P PPF L
Sbjct: 216 DPLNSPPQNQPQSLIL-PSVPSTAIPEPPFHL 246


>12_01_0376 - 2934115-2934603
          Length = 162

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 591 WRXPTGLXRXQAFPPWKPP 647
           WR P    R  A PPW PP
Sbjct: 38  WRTPPKRARSSAAPPWAPP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,224
Number of Sequences: 37544
Number of extensions: 273737
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)