Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N19
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   2.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    22   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.1  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = -1

Query: 863 GRGXWXGXXXGXXGXGXXQXXGGXGXSGXEEXGAGXXGXTRG 738
           GRG + G   G  G       GG G       G G  G +RG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG 180


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 762  GSXFFXSTXPXPPPXLXXSXXXXPPGXPTPXPPPXXP 872
            GS       P PPP +       P   PT   PP  P
Sbjct: 1873 GSDLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGP 1909


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.2 bits (45), Expect(2) = 5.5
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +3

Query: 597 PXXCXLXXPXPXX-PXPPX*PLILXXPXIPPP 689
           P    +  P P   P PP  P++   P  PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 22.2 bits (45), Expect(2) = 5.5
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +3

Query: 789 PXPPPXLXXSXXXXPPGXPTPXP 857
           P PPP         PP  P P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 780 STXPXPPPXLXXSXXXXPPGXPTPXPPP 863
           S  P  PP         PP  P P PPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +1

Query: 682  PPXXPXADPLNVGTXXAAXPLVXPXXPAPXSSXPLXPXPPXXXSXPXP 825
            P   P + P  V    +  P   P  PAP S  P  P P      P P
Sbjct: 1042 PVPIPTSTP-PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/54 (24%), Positives = 16/54 (29%)
 Frame = +1

Query: 673 PXYPPXXPXADPLNVGTXXAAXPLVXPXXPAPXSSXPLXPXPPXXXSXPXPXHP 834
           P  PP  P + P+         P      P P       P PP   + P    P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,051
Number of Sequences: 5004
Number of extensions: 11209
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)