Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N15
         (998 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.5  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 774 PXLGTPPXPXAPLXXXPXXPGXXQXPXPPPPXPXPLI 884
           P +G PP P  P       PG      PPPP P P +
Sbjct: 756 PIMGGPPPPPPP-------PGVAGAGPPPPPPPPPAV 785



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 759 PNXXXPXLGTPPXPXAPLXXXPXXPGXXQXPXPPPP 866
           P    P +  P    AP+   P  P     P PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 831 PGXXQXPXPPPPXPXPL 881
           P     P PPPP P P+
Sbjct: 899 PTIITHPTPPPPPPLPV 915



 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 855 PPPPXPXPLIXSS 893
           PPPP P PL+ ++
Sbjct: 946 PPPPPPPPLVSAA 958


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +3

Query: 759  PNXXXPXLGTPPXPXAPLXXXPXXPGXXQXPXPPPPXPXPLIXSS 893
            P    P   + P P  P    P  P     P  PP  P P + +S
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +3

Query: 774  PXLGTPPXPXAPLXXXPXXPGXXQXPXPPPPXPXPLIXSS 893
            P +  P  P  P+   P          PP   P PL  SS
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 786 TPPXPXAPLXXXPXXPGXXQXPXPPP 863
           +PP P AP+   P      + P PPP
Sbjct: 270 SPPRPIAPVSMNPAINSTSKPPLPPP 295


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 21/92 (22%), Positives = 25/92 (27%), Gaps = 5/92 (5%)
 Frame = +3

Query: 618  PTXPXXVPCXSXGPPPXPVS*XSPXXXXXXXXXXXXXXXXXXXXXXHPNXXXPXL----- 782
            P+    VP  S   PP PV   +P                       P+   P +     
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176

Query: 783  GTPPXPXAPLXXXPXXPGXXQXPXPPPPXPXP 878
            G PP P       P  P     P P P    P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 789 PPXPXAPLXXXPXXPGXXQXPXPPPP 866
           P  P  P+   P  PG      PPPP
Sbjct: 269 PGMPAMPMMNVPMGPGGAPLVPPPPP 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,515
Number of Sequences: 5004
Number of extensions: 14416
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)