Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N13
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    44   4e-05
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    43   6e-05
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    41   2e-04
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.9  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 28/91 (30%), Positives = 39/91 (42%)
 Frame = +2

Query: 185 DVXXLLSSVGIXAXAXXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGGXXXXXXXXXXX 364
           D+  +LS+VGI A +  ++ +  EL G  +  LIAAG   L+++P GG            
Sbjct: 22  DIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGA--ASAAPAAAA 79

Query: 365 XXXXEXXXXXXXXXXXXXSESDXXXGFGLFD 457
                              ESD   GFGLFD
Sbjct: 80  GGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 29/91 (31%), Positives = 38/91 (41%)
 Frame = +2

Query: 185 DVXXLLSSVGIXAXAXXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGGXXXXXXXXXXX 364
           D+  +LS+VGI A A  ++ +  EL G  +  LIAAG   LS++P  G            
Sbjct: 22  DIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAGGAAG 81

Query: 365 XXXXEXXXXXXXXXXXXXSESDXXXGFGLFD 457
                              ESD   GFGLFD
Sbjct: 82  AEATS--AAEEAKEEEAAEESDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 27/91 (29%), Positives = 39/91 (42%)
 Frame = +2

Query: 185 DVXXLLSSVGIXAXAXXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGGXXXXXXXXXXX 364
           D+  +LS+VGI + +  ++ +  EL G  +  LIAAG   L+++P GG            
Sbjct: 22  DIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGGA--AAAAAPAAA 79

Query: 365 XXXXEXXXXXXXXXXXXXSESDXXXGFGLFD 457
                              ESD   GFGLFD
Sbjct: 80  GGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 456 TKLYKXTRRWSLFQFMF 506
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,054
Number of Sequences: 5004
Number of extensions: 8013
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)