Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N13
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     42   5e-04
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    36   0.042
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           34   0.13 

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +2

Query: 185 DVXXLLSSVGIXAXAXXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGG 331
           D+  +L SVG+ A    L+ +  EL G  +  +IAAGR   +S+P GGG
Sbjct: 22  DIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 185 DVXXLLSSVGIXAXAXXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGG 331
           D+  +L SVG       ++ +  +L G  +  +IA+GR   +S+P GGG
Sbjct: 215 DLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGGG 263


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 185 DVXXLLSSVGIXAXAXXLKXVXXELXGXXVXXLIAAGRXXLSSMPVGGG 331
           D+  +L SVG       ++ +  ++ G  +  LIA GR   +S+P GGG
Sbjct: 22  DLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSGGG 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,608,726
Number of Sequences: 37544
Number of extensions: 80820
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)