Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N09
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   143   3e-35
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   143   3e-35
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   6.3  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  143 bits (346), Expect = 3e-35
 Identities = 67/98 (68%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
 Frame = +2

Query: 206 VIVKFLTVXXXHGYIGXFEIVDDHRAGKXVVNLTGRLNKCGVISPRFDVPINDIERWTN- 382
           VIVKFLTV   HGYI  F  +DDHR+GK V+ L GR+NKCGVISPRF+V + DIE+W N 
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQ 92

Query: 383 LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 496
           LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 93  LLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 VRLHVLXXALKSLHXAEKRGXSQVLIRP 195
           VR  VL   L ++  AE+RG  QVLIRP
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  143 bits (346), Expect = 3e-35
 Identities = 67/98 (68%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
 Frame = +2

Query: 206 VIVKFLTVXXXHGYIGXFEIVDDHRAGKXVVNLTGRLNKCGVISPRFDVPINDIERWTN- 382
           VIVKFLTV   HGYI  F  +DDHR+GK V+ L GR+NKCGVISPRF+V + DIE+W N 
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQ 92

Query: 383 LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 496
           LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 93  LLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 VRLHVLXXALKSLHXAEKRGXSQVLIRP 195
           VR  VL   L ++  AE+RG  QVLIRP
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -3

Query: 471 PRCFLLASSWSMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTT 292
           P    + S +S+ P +   T     R        S+S   +      TPH F  PV   +
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNAS 197

Query: 291 XLPAL 277
            LPAL
Sbjct: 198 PLPAL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,872
Number of Sequences: 5004
Number of extensions: 24570
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)