Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N08
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.85 

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEAXGK 8
           E Q +RE E +   +     +RE  EKAK + +      A E +K+  +E    EA  K
Sbjct: 566 EEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEK 624



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEAXGK 8
           E   +RE E Q   +     +RE  EKAK + +      A E +K+  +E    EA  K
Sbjct: 558 EENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEK 616



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEAXGK 8
           E + +RE E +   +     +RE  EKAK + +      A E +K+  +E    EA  K
Sbjct: 582 EEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 640



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTER--REVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEAXG 11
           E++ + + EA++  K    E+  RE  EKAK + +      A E +K+  +E    EA  
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEE 647

Query: 10  K 8
           K
Sbjct: 648 K 648



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEAXGK 8
           E   +RE E +   +     +RE  EKAK + +      A E +K+  +E    EA  K
Sbjct: 598 EENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 656



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEAXGK 8
           E + +RE E +   +     +RE  EKAK + +      A E +K+  +E    EA  K
Sbjct: 614 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEK 672



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEAXGK 8
           E + +RE E +   +     +RE  EKAK + +      A E +K+  +E    EA  K
Sbjct: 630 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEK 688



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEA 17
           E + +RE E +   +     +RE  EKAK + +      A E +K+  +E    EA
Sbjct: 606 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREA 661



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 184 ESQHQREDEAQKTDKXXXTERREVPEKAKGQRQRXGDANA*EVSKKVGKEARVGEA 17
           E + +RE E +   +     +RE  EKAK + +      A E +K+  +E    EA
Sbjct: 622 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREA 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,006
Number of Sequences: 5004
Number of extensions: 31056
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)