Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N08
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    32   0.46 
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    31   0.80 
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L prot...    31   1.1  
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    28   9.9  
AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a prote...    28   9.9  

>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 434 FLYVLDYIMQFLDYISNYYKNTTVIAFIRVIKYTCAEIYF 553
           F+Y++ YI+  + Y     K    + F  VI +TCA I F
Sbjct: 651 FIYIIYYILMKMIYREKIPKRAIALLFAAVISWTCAGILF 690


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 191 RXREPAPTRRRSAKDGQXAXDR-KARSAGEGKRPKTKXGRRERVRS 57
           R R P+P RRR ++D     DR + RS     R + +   R+R RS
Sbjct: 280 RRRSPSPRRRRDSRDRDRDRDRDRRRSRDRRSRSRDRDRDRDRKRS 325


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 191 RXREPAPTRRRSAKDGQXAXDR-KARSAGEGKRPKTKXGRRERVRS 57
           R R P+P RRR ++D     DR + RS     R + +   R+R RS
Sbjct: 280 RRRSPSPRRRRDSRDRDRDRDRDRRRSRDRRSRSRDRDRDRDRKRS 325


>Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical
           protein C52E4.6a protein.
          Length = 480

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 197 ADRXREPAPTRRRSAKDGQXAXDRKARSAGEGKRPK-TKXGRRERVRS 57
           ADR ++     RR + D     DR+ R    G R K  K  RR+R RS
Sbjct: 403 ADRGKKEKDRHRRRSNDRDGRGDRRDRDKDRGDRRKDEKKDRRKRTRS 450


>AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L
           protein.
          Length = 480

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 197 ADRXREPAPTRRRSAKDGQXAXDRKARSAGEGKRPK-TKXGRRERVRS 57
           ADR ++     RR + D     DR+ R    G R K  K  RR+R RS
Sbjct: 403 ADRGKKEKDRHRRRSNDRDGRGDRRDRDKDRGDRRKDEKKDRRKRTRS 450


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -1

Query: 191 RXREPAPTRRRSAKDGQXAXDRKARSAGEGKRPKTKXGRRERVRS 57
           R R P P RRRS   G    DRK+RSA   KR   +     + RS
Sbjct: 205 RSRSP-PARRRSP--GSDRSDRKSRSASPKKRSDKRARSESKSRS 246


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 194 DRXREPAPTRRRSAKDGQXAXDRKARS-AGEGKRPKTKXGRRERVRSEQ 51
           DR R    TRRR  ++      R+ RS +  G R + +  R    R E+
Sbjct: 410 DRDRRDRETRRRGERESDRTSSRRHRSRSASGDRRRKRDDREREKRRER 458


>AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a protein
           protein 6 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 606 EIYNYYHNILKLHYIASLKYISAHVYLITLMKAMTV 499
           +++ +Y NI+ +HY+   + I A V   + + A+ +
Sbjct: 228 KVFGHYFNIIPIHYLFHFENIEATVEYFSALNALNI 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,390
Number of Sequences: 27780
Number of extensions: 174632
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)