Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N07
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.6  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   6.1  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   8.1  

>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 324 NARCXYSNGGTCSTNKTDEDGCEVRDIYAI 413
           NA      GGTC   + + D C+  D Y +
Sbjct: 64  NATILVDTGGTCECTEANRDDCDKLDDYVL 93


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 414 VSHRYHGLHIHLRQFYWLNRSLRY 343
           + HRY   H  LRQFY    +LRY
Sbjct: 221 LKHRYKSQHHRLRQFYADCSNLRY 244


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 675 EAFTKATFNLTYEELLEYRNGVYNHARQSATXG 773
           EA  K    +TY++ +   NG+    RQ +T G
Sbjct: 774 EALQKPKVKITYDKYVSIMNGILQVLRQRSTEG 806


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 HGYCSACAKCCKQISRSQ 473
           H YC +CAK  K   RSQ
Sbjct: 214 HVYCGSCAKVLKTSKRSQ 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,527
Number of Sequences: 5004
Number of extensions: 55224
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)