Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N07
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 524 HNKSADESCVQGVTPLKLAS*DLFAAF 444
           HN    E+C QGV  ++++S ++   F
Sbjct: 114 HNLVGKEACKQGVCTVEVSSENMTVTF 140


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 524 HNKSADESCVQGVTPLKLAS*DLFAAF 444
           HN    E+C QGV  ++++S ++   F
Sbjct: 114 HNLVGKEACKQGVCTVEVSSENMTVTF 140


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 719 VGVSERCLQSCPSICNXGXLVSD 787
           +G+    +Q+CP   N   L SD
Sbjct: 149 IGIGNTTIQACPYTLNIFDLTSD 171


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 512 RICYDSGWKILQSVRQRKERGCSNI 586
           ++ Y   W++  ++  R E  CS I
Sbjct: 97  KVTYSGLWRVCVAISSRMEYECSRI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,558
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)