Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N05
         (1037 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase...    31   9.1  
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    31   9.1  
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    31   9.1  
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    31   9.1  

>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
           transcription factor protein.
          Length = 1083

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 607 AIXXPXXXPPPAXHTXXXXPXPXAXXPLXRPXXSPXXPPSXXXSLP 744
           A   P   P PA       P P A   L RP   P  PP+   ++P
Sbjct: 251 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 296


>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 607 AIXXPXXXPPPAXHTXXXXPXPXAXXPLXRPXXSPXXPPSXXXSLP 744
           A   P   P PA       P P A   L RP   P  PP+   ++P
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298


>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 607 AIXXPXXXPPPAXHTXXXXPXPXAXXPLXRPXXSPXXPPSXXXSLP 744
           A   P   P PA       P P A   L RP   P  PP+   ++P
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298


>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 607 AIXXPXXXPPPAXHTXXXXPXPXAXXPLXRPXXSPXXPPSXXXSLP 744
           A   P   P PA       P P A   L RP   P  PP+   ++P
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,626,585
Number of Sequences: 237096
Number of extensions: 1067357
Number of successful extensions: 1891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14041964804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)