Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N02
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.90 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.90 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.8  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    27   4.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   4.8  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    26   6.4  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = -2

Query: 208 GSGAALTAXESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRKAR 29
           G G++L+   S+H+ + +     +       E  R  K+ +K++  +  KKE     ++ 
Sbjct: 581 GQGSSLSRRASKHESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRSH 640

Query: 28  S 26
           S
Sbjct: 641 S 641


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 406 LNSLKLEIHNYLQSCFKLNASLEFNDKVY 320
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRKARSR 23
           E++ Q + EA++  K    E  +    +KAK +      R+ E+K  R+A  +
Sbjct: 564 EAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEK 616



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRKARSR 23
           E++ + + EA++  K    E  +    +KAK +      R+ E+K  R+A  +
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 640


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 205 SGAALTAXESQHQREDEAQKTXKXXXTEXRECRRXQKAK-DKERATRTRKKEQKXVRK 35
           +GA   A  +Q ++E+E ++  +    +       +KAK DK++A +  KK  K   K
Sbjct: 305 AGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDKKKAQKRDKKVVKNALK 362


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRK 35
           +S+ ++  E+ +  +    +  E RR ++AK KE+  +  KKE+K  +K
Sbjct: 424 DSKKRKSVESSEKDEDEAAKKEEKRRKKEAK-KEKKEKKEKKEKKEKKK 471



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQK 47
           ES  + EDEA K  K      +E ++ +K K +++  + +KK+ +
Sbjct: 432 ESSEKDEDEAAK--KEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 289 AIAGPALINPXRTLRPTXSIXLKS 218
           AIA P +I+P  ++RP  S+ +KS
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKS 225


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 163 EDEAQKTX-KXXXTEXRECRRXQKAKDKERATRTRKKEQ 50
           EDEA     K    E RE +  +K + KE+ T  RKK++
Sbjct: 128 EDEALLAERKQRLKEQREKKEQKKEQKKEKKTERRKKKK 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,701
Number of Sequences: 5004
Number of extensions: 23406
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)