Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_N02
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 35 0.10
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 31 0.95
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 3.8
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 5.1
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 29 5.1
02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724 29 6.7
10_08_0374 - 17312430-17312513,17312794-17313029,17313081-173132... 28 8.8
03_05_0371 + 23570246-23570359,23570499-23570575,23570600-235706... 28 8.8
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 28 8.8
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 34.7 bits (76), Expect = 0.10
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -2
Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRKARSRXGXXK 8
+ Q ++E+EAQK K E E R+ QK K +E A + +K+ +K + + + K
Sbjct: 382 KQQRKQEEEAQKEQKRREKEEAETRKQQK-KQQEEAEKEQKRREKEAVQLKKQLAIQK 438
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 169 QREDEAQKTXKXXXTEXRECRRXQKAKDKERA--TRTRKKEQKXVRKARSR 23
Q+E E + K + E R QK ++KE A + ++K+++ +K + R
Sbjct: 347 QKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKR 397
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 31.5 bits (68), Expect = 0.95
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -2
Query: 175 QHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKE---QKXVRKARSR 23
+ +R E +K K E +E R+ ++ K+KER + R KE +K K RSR
Sbjct: 738 EKERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSR 791
>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 166 REDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRKARSR 23
RE+E ++ + E R QKAK KE R R+K +K + +A R
Sbjct: 1272 REEELRQ--EKAAAEKERLRLEQKAKAKEAEERKRRKAEKALERAEFR 1317
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = -2
Query: 205 SGAALTAXESQHQREDEAQKTXKXXXTEXRECRRX----QKAKDKERATRTRKKEQKXVR 38
+G+ + +R ++ K E R RR +K K+KER +KKE+K R
Sbjct: 119 AGSESETDSEEERRRRRRRRRRKEREEEERRRRRKDKERRKRKEKERERERKKKEKKKRR 178
Query: 37 KARSR 23
K +
Sbjct: 179 KEEKK 183
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRKARSRXG 17
E + +RE E +K + E RR + +D+ER R R + VR+ + G
Sbjct: 126 EKEKEREREREKDRERRSRSRSERRRDDEERDRER-YRERDYRDRDVRRRKEEAG 179
>02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724
Length = 543
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 252 VRXGLIKAG-PAIAVIGQAKSLGK*TLSLNSKDAFSLKH 365
VR ++KA P I V+G SL LSL+SKD L+H
Sbjct: 68 VRVTIVKAQHPWIVVVGSPMSLRPIDLSLSSKDRDILEH 106
>10_08_0374 -
17312430-17312513,17312794-17313029,17313081-17313261,
17313335-17313445,17313495-17313722,17313862-17313999,
17314159-17314375,17314452-17314564,17314919-17314921
Length = 436
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERAT--RTRKKEQ 50
E Q Q E EA++ + +E R ++ ++KER R R+KEQ
Sbjct: 333 ERQLQEEREAREREREEREREKERERQEREQEKERECEERAREKEQ 378
>03_05_0371 +
23570246-23570359,23570499-23570575,23570600-23570675,
23570761-23570892,23570945-23571412,23571513-23571590,
23571693-23571809
Length = 353
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 181 ESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERAT--RTRKKEQ 50
E Q Q E EA++ + +E R ++ ++KER R R+KEQ
Sbjct: 213 ERQLQEEREAREREREEREREKERERQEREQEKERECEERAREKEQ 258
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -2
Query: 208 GSGAALTAXESQHQREDEAQKTXKXXXTEXRECRRXQKAKDKERATRTRKKEQKXVRKAR 29
G G E + QRE E ++ + E R+ R ++ + +ER R++ +K +K R
Sbjct: 477 GKGEKEREEEERRQREKEEEE--RRRQEEERKRREEEEKERREREEEERRQREKEEKKRR 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,396,131
Number of Sequences: 37544
Number of extensions: 141455
Number of successful extensions: 356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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