Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_N01
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    29   4.3  
AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical ...    28   10.0 

>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
 Frame = -2

Query: 396 HFFDRTPPIPARXGSGAPPTXTCMWRPXXLPALTHSSITXXXSATLRDIXXPXVPPTSTH 217
           +FF   PP PA   S  PP  +    P      T SS T   S+   +   P  PP    
Sbjct: 331 YFFQAPPPAPASSSSTVPPAVSPFGVPLGAQPSTTSSTT--YSSNYSNPSYP--PPPKVD 386

Query: 216 LKPAXAIYL---AYPGIA 172
           L P   + L    YP ++
Sbjct: 387 LPPPGIVQLDRVVYPPVS 404


>AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical
           protein Y116A8C.13 protein.
          Length = 833

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 855 VNXWXARHXXWWRGXXRFHXLIXNSAQDSXSY 760
           VN W A    WWR   RF  +I  +A D  +Y
Sbjct: 278 VNNWKAEFDKWWR-LMRFPAVIALTANDITTY 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,942
Number of Sequences: 27780
Number of extensions: 273244
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)