Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M24
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.045
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.74 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.045
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 689 PPXXPXXPPPPPHHXXXPXXXXXPPPXXPPPXPP 790
           P   P   P  P     P     PPP  PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.2 bits (55), Expect = 0.42
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 820 PXPPPXPXXXPXXPXXPXXPXLPXXXPPPPXPXPXP 927
           P P P P   P  P     P  P   PPP  P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPN-PSQGPPPGGPPGAP 55



 Score = 25.8 bits (54), Expect = 0.56
 Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
 Frame = +3

Query: 798 PPXXPPXPXXXPXP-PXXPXXXXXP-PXXXPPPXXPPPPXPXXXP 926
           P    P P   P   P  P     P P   PPP  PP   P   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.74
 Identities = 16/55 (29%), Positives = 17/55 (30%)
 Frame = +2

Query: 650 QXPPXLPPLXXXPPPXXPXXPPPPPHHXXXPXXXXXPPPXXPPPXPPXXPSXXPP 814
           Q  P +      P    P  P P PH          PP     P PP  P   PP
Sbjct: 4   QKQPIITQQSQQPSSGAPG-PQPSPHQSPQAPQRGSPPNPSQGP-PPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 796 PLPXPPPXPXPPPXPXXXPXXPXXPXXPXLPXXXPPPPXP 915
           P P P P   P       P  P     P  P   PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 787 PXPPLPXPPPXPXPPPXPXXXPXXPXXPXXPXL 885
           P PP+P        PP P      P  P  P +
Sbjct: 416 PMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSM 448



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +1

Query: 757 PPPXXXXPXXPXPPLPXPPPXPXPPPXPXXXPXXP 861
           P P       P  P    PP P   P P   P  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/37 (29%), Positives = 12/37 (32%)
 Frame = +1

Query: 760 PPXXXXPXXPXPPLPXPPPXPXPPPXPXXXPXXPXXP 870
           PP    P  P P +      P  P  P   P  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 12/43 (27%), Positives = 12/43 (27%)
 Frame = +2

Query: 800 SXXPPXXPXXPXXPXXPPXXXXPPXXPXSPXXXPPPPPPXPPP 928
           S  P   P     P  P     P      P   PP  PP   P
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 14/46 (30%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
 Frame = +3

Query: 786 PXPXPPXXPPXPXXXPXPPXX---PXXXXXPPXXXPPPXXPPPPXP 914
           P    P   P P   P  P     P     PP   P P  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQNP 60


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 839 GXGGGXGXGGGXGRGG 792
           G G G G GG  GRGG
Sbjct: 81  GKGRGHGKGGSRGRGG 96



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 851 GXXXGXGGGXGXGGGXGRGG 792
           G   G GG  G GG  GR G
Sbjct: 83  GRGHGKGGSRGRGGNRGRTG 102


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 899  PPPPPPXP 922
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 902  PPPPPXPP 925
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 905  PPPPXPPP 928
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 793 PPLPXPPPXPXPPPXP 840
           PP P PPP P     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 882 PPPXXPPPPXPXXXPP 929
           PP   PPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 692 PXXPXXPPPPP 724
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 758 PPPXXPPPXPP 790
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 878  PXSPXXXPPPPPP 916
            P S    PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +2

Query: 722  PHHXXXPXXXXXPPPXXPPPXPPXXPS 802
            PH    P     PPP  P P     P+
Sbjct: 1154 PHLPFTPFNFWNPPPFMPSPFMAGAPN 1180


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +1

Query: 808 PPPXPXPPPXPXXXPXXPXXPXXPXLPXXXPPPP 909
           PPP     P        P  P  P +P    P P
Sbjct: 766 PPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVP 799


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,628
Number of Sequences: 438
Number of extensions: 10638
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)