Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M23
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   218   7e-58
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   216   4e-57
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   207   2e-54
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.64 
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   6.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   7.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   7.9  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  218 bits (533), Expect = 7e-58
 Identities = 105/197 (53%), Positives = 132/197 (67%)
 Frame = +2

Query: 83  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 262
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 263 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 442
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 443 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKTLKRITKDAGEX 622
               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+  L +  K A   
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIAS-- 181

Query: 623 VSKATTPFTTIIQSYGY 673
            +K  +P    +  +GY
Sbjct: 182 -AKEASPVNQKLSQFGY 197


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  216 bits (527), Expect = 4e-57
 Identities = 105/197 (53%), Positives = 132/197 (67%)
 Frame = +2

Query: 83  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 262
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 263 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 442
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 443 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKTLKRITKDAGEX 622
               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+  L +  K A   
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIAS-- 181

Query: 623 VSKATTPFTTIIQSYGY 673
            +KA +     +  +GY
Sbjct: 182 -AKAASSVNGKLAEFGY 197


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  207 bits (505), Expect = 2e-54
 Identities = 91/160 (56%), Positives = 117/160 (73%)
 Frame = +2

Query: 83  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 262
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 263 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 442
           NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 443 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 562
               LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 110 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNK 223
           H L  + AV  K++  G K VV+RC+ I  + +FF ++
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFFCSR 194


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 551 KGKAVKRVAYEKTLKRITKDAGEXVSKATTP 643
           KGK V R+ Y+     +  D+GE ++K   P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 193 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 56
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR   N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 542 DKRKGKAVKRVAYEKTLKRITKDAGE-XVSKATTPFTTIIQSYG 670
           DKR+   +  + YEK L+ + K+  E  +     P  ++I+ YG
Sbjct: 18  DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 396 GHPSYVRSLLRAFLPRSVLCGIMP 325
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,993
Number of Sequences: 5004
Number of extensions: 53813
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)