Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M21
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    28   1.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   5.8  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 447 LSILYSGLCADEVKIVDGPSKYPSCT-CXREMXPVCGSDGITYXXDWLLNCATINDSRLG 623
           LS   SG CA    I+D  S+Y  C  C +   P  G   +    D LLN  +   S+ G
Sbjct: 158 LSASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLV-CSDVLLNDDSNCPSKKG 216

Query: 624 IEYY 635
           I  Y
Sbjct: 217 INNY 220


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 204  YRNQRPVCGTDGKTYNNECLLDC 272
            Y N  P C TD +  +  C +DC
Sbjct: 955  YANDEPPCPTDEEIQHTLCTIDC 977


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,164
Number of Sequences: 5004
Number of extensions: 42741
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)