Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M17
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologu...    35   0.067
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologue
           protein 1 protein.
          Length = 154

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = +2

Query: 236 RLCXLKXGXNAXVSFDFTPQFSTTKLXXGLFGLXXGAXIPFDALYXADACXL-TSCPXEA 412
           ++C  K G    +   F P   T KL   +     G+ +       +DAC     CP  A
Sbjct: 48  KVCLFKKGSRPIIQIAFKPSKDTDKLKTSVRAKVGGSAMVDFPQTNSDACTYGVKCPVSA 107

Query: 413 GKTXTLDFSLXIGKKLPTG-XFEFKWXL 493
           G+    + S+ I +  P G   +  W L
Sbjct: 108 GENQIFEQSISITENHPAGEVIQVNWQL 135


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 216 LTPXLTVXCAXSXKGKTRRFLSTLH 290
           LTP +T  C+   KGK ++ LS+ H
Sbjct: 31  LTPIITAQCSKKPKGKKKKKLSSSH 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,815,434
Number of Sequences: 27780
Number of extensions: 85801
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)