Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M16
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    55   1e-08
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    55   2e-08

>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 102 RXXXVGXXGXXGXRXGASLRXXVXXXXVXXXAXXXCSFCGXXAXXRSCVGXWSC--KRCX 275
           R   VG  G  G R GASLR  V    V   +   C FCG     R+  G W C  K C 
Sbjct: 4   RTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCS 63

Query: 276 XXVAGGAW 299
             +AGGAW
Sbjct: 64  KTLAGGAW 71


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 102 RXXXVGXXGXXGXRXGASLRXXVXXXXVXXXAXXXCSFCGXXAXXRSCVGXWSC--KRCX 275
           R   VG  G  G R GASLR  V    V   +   C FCG     R+  G W C  K C 
Sbjct: 4   RTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCK 63

Query: 276 XXVAGGAW 299
             +AGGAW
Sbjct: 64  KVLAGGAW 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,721
Number of Sequences: 5004
Number of extensions: 6833
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)