Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M16
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...    63   2e-10
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   3.3  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/70 (42%), Positives = 35/70 (50%)
 Frame = +3

Query: 96  AXRXXXVGXXGXXGXRXGASLRXXVXXXXVXXXAXXXCSFCGXXAXXRSCVGXWSCKRCX 275
           A R   VG  G  G R GASLR       V   +   CSFCG  A  R   G W+C +C 
Sbjct: 2   AKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCH 61

Query: 276 XXVAGGAWVF 305
             VAGGA+V+
Sbjct: 62  KVVAGGAYVY 71


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/59 (30%), Positives = 19/59 (32%)
 Frame = -1

Query: 865 GXXXKXWGXGXPGXGGXXIXAXEGXDTGXPXPXXGGXXVRGXGXGKGAQXANRXAXGGG 689
           G     WG G PG G     +  G   G      GG    G   G G     R   GGG
Sbjct: 42  GWGRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGG 100


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
 Frame = -1

Query: 847 WGXGXPGXGGXXIXAXEGXD-TGXPXPXXGGXXVRGXGXGKGAQXANRXAXGGG 689
           WG    G GG       G D  G P    GG      G G+G         GGG
Sbjct: 125 WGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGG 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,680,026
Number of Sequences: 27780
Number of extensions: 65945
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)